RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C9orf64Q5T6V5 341 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 KCNIP4Q6PIL6 250 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZER1Q7Z7L7 766 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TMEM192Q8IY95 271 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 DCAF4L2Q8NA75 395 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 OR52H1Q8NGJ2 320 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 BBS10Q8TAM1 723 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SNAPC3Q92966 411 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TMEM74Q96NL1 305 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 DPYSL5Q9BPU6 564 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 OCSTAMPQ9BR26 566 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZNF559Q9BR84 538 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 PELOQ9BRX2 385 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 BPIFA1Q9NP55 256 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CENPMQ9NSP4 180 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 IL17CQ9P0M4 197 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TIMM22Q9Y584 194 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ANKRD66B4E2M5 251 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RPL7P18124 248 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 DGKEP52429 567 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SMSP52788 366 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CAMK2BQ13554 666 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RAB33AQ14088 237 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 AMZ1Q400G9 498 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SPATC1Q76KD6 591 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RDH10Q8IZV5 341 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GOT1L1Q8NHS2 421 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 IFI44Q8TCB0 444 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 DCUN1D4Q92564 292 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GAL3ST4Q96RP7 486 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 MED9Q9NWA0 146 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 WASF3Q9UPY6 502 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RAI2Q9Y5P3 530 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 NUBP2Q9Y5Y2 271 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 EIF1AYO14602 144 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 HLA-DQB1P01920 261 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 LAMP2P13473 410 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 KIAA0040Q15053 153 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 OR4D1Q15615 310 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CDNFQ49AH0 187 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 AVPI1Q5T686 147 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 FAM69AQ5T7M9 428 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TAPT1Q6NXT6 567 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZC3H14Q6PJT7 736 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 CYHR1Q6ZMK1 362 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GDPD3Q7L5L3 318 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZMIZ2Q8NF64 920 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TMEM41AQ96HV5 264 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ADAD1Q96M93 576 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 TSSK3Q96PN8 268 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 LYSMD1Q96S90 227 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TMEM121BQ9BXQ6 578 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 RRAGCQ9HB90 399 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 IL37Q9NZH6 218 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 NRXN2Q9P2S2 1712 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TRDV1A0A1B0GX56 115 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CHEK1O14757 476 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 RFPL3O75679 317 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TP53P04637 393 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ALDOBP05062 364 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LMO2P25791 158 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HSD11B1P28845 292 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 EIF1AXP47813 144 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 P2RX3P56373 397 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TRA2BP62995 288 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 BCL2L1Q07817 233 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 DUSP4Q13115 394 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PIN1Q13526 163 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 REEP3Q6NUK4 255 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 GID4Q8IVV7 300 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 RGL4Q8IZJ4 473 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 Q8N402 240 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 YIPF7Q8N8F6 280 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 OR7G3Q8NG95 312 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NANPQ8TBE9 248 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PCNPQ8WW12 178 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ACOT11Q8WXI4 607 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 NDUFB11Q9NX14 153 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CXXC1Q9P0U4 656 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 B3GALT1Q9Y5Z6 326 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM72CH0Y354 149 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FMO6PO60774 539 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 RAB36O95755 333 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PDYNP01213 254 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FGBP02675 491 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ADH1AP07327 375 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FHP07954 510 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CPN1P15169 458 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 AGTR1P30556 359 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 AAK1Q2M2I8 961 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 C4orf17Q53FE4 359 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TMEM69Q5SWH9 247 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM72AQ5TYM5 149 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PRPF38BQ5VTL8 546 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM72DQ6L9T8 149 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 GSG1LQ6UXU4 331 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PAQR9Q6ZVX9 377 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM72BQ86X60 149 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ADAMTS19Q8TE59 1207 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HGDQ93099 445 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms