RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 OR4C15Q8NGM1 316 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 C16orf58Q96GQ5 468 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 DIMT1Q9UNQ2 313 aaKnown RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 RASD1Q9Y272 281 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 A0A0G2JMZ2 1700 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 LRRC37A2A6NM11 1700 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 A0A0G2JMP0 313 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 A0A0X1KG70 313 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 IQCMA0A1B0GVH7 501 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 EFCAB14O75071 495 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ACP2P11117 423 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 MLLT3P42568 568 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 SLC1A3P43003 542 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 CCR4P51679 360 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 SNRPGP62308 76 aaKnown RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 LSM11P83369 360 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIG1-221ENST00000613670 DBPQ10586 325 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 SF3A2Q15428 464 aaKnown RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 LYPD8Q6UX82 237 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ABI3BPQ7Z7G0 1075 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 VRK2Q86Y07 508 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR4N5Q8IXE1 308 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR4M2Q8NGB6 313 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ZNF514Q96K75 400 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 FUZQ9BT04 418 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 NDC1Q9BTX1 674 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 SLC28A3Q9HAS3 691 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 SLC35C2Q9NQQ7 365 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 SPHK2Q9NRA0 654 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 PHF11Q9UIL8 331 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 GCM2O75603 506 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 SCO1O75880 301 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 PAHP00439 452 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 CTGFP29279 349 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 KCNJ5P48544 419 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ZNF79Q15937 498 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 NDUFAF6Q330K2 333 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 IKBIPQ70UQ0 350 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ATCAYQ86WG3 371 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 KCT2Q8NC54 265 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR6K6Q8NGW6 343 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR10G6Q8NH81 332 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 POLDIP3Q9BY77 421 aaKnown RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 RNF208Q9H0X6 261 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 FOLH1BQ9HBA9 442 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 GPATCH2Q9NW75 528 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 WDR45Q9Y484 360 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 AP1M2Q9Y6Q5 423 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 HEPACAM2A8MVW5 462 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 IFNA7P01567 189 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 PRLHRP49683 370 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 AP2S1P53680 142 aaPredicted RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 TSPAN5P62079 268 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 OR2T35Q8NGX2 323 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 TMEM163Q8TC26 289 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 ALG14Q96F25 216 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 PDXPQ96GD0 296 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 GSDMCQ9BYG8 508 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 TTYH1Q9H313 450 aaPredicted RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 MRPS30Q9NP92 439 aaKnown RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 C12orf4Q9NQ89 552 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 DEC1Q9P2X7 70 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 LRRC72A6NJI9 287 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 SLC9A3R1O14745 358 aaPredicted RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 SLC19A2O60779 497 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 NT5EP21589 574 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 PRKACBP22694 351 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 GIFP27352 417 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 GZMKP49863 264 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 BTN3A2P78410 334 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 SNTB2Q13425 540 aaKnown RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 FAM26DQ5JW98 314 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 PLPP6Q8IY26 295 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 CD180Q99467 661 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 BTBD2Q9BX70 525 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 HS3ST2Q9Y278 367 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 V9GYH0 126 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 ZNF236Q9UL36 1845 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 MN1Q10571 1320 aaPredicted RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 K7ESM1 405 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 PLPP1O14494 284 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 TGM5O43548 720 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 C6P13671 934 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 LAG3P18627 525 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 MAT2AP31153 395 aaKnown RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 NTHL1P78549 312 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 RAB33AQ14088 237 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 EFR3AQ14156 821 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 TRIM71Q2Q1W2 868 aaKnown RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 TOR1AIP1Q5JTV8 583 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 MLIPQ5VWP3 458 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 GJD3Q8N144 294 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 NUP43Q8NFH3 380 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 SUN3Q8TAQ9 357 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 ARSGQ96EG1 525 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 GINS4Q9BRT9 223 aa11.87□□□□□ -0.51
LIG1-221ENST00000613670 CPEB1Q9BZB8 566 aaKnown RBP11.87□□□□□ -0.51
LIG1-221ENST00000613670 PCM1Q15154 2024 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 SOCS6O14544 535 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 RGS13O14921 159 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms