RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 CPTPQ5TA50 214 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SLC2A7Q6PXP3 512 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 DGAT2L6Q6ZPD8 337 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MED25Q71SY5 747 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CXorf67Q86X51 503 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CLECL1Q8IZS7 167 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SIMC1Q8NDZ2 872 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 OR8J2Q8NGG1 315 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 DOK4Q8TEW6 326 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SNRNP27Q8WVK2 155 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TSLPQ969D9 159 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 EXOSC8Q96B26 276 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TBC1D20Q96BZ9 403 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PPCDCQ96CD2 204 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CCDC124Q96CT7 223 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 NPAS2Q99743 824 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 ZPBPQ9BS86 351 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 DUSP26Q9BV47 211 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SCNM1Q9BWG6 230 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TRIM4Q9C037 500 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 VN1R1Q9GZP7 353 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TCF7L1Q9HCS4 588 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SERHLQ9NQF3 203 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MIEF1Q9NQG6 463 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 NECTIN3Q9NQS3 549 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MS4A12Q9NXJ0 267 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TAS2R7Q9NYW3 318 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 EHD3Q9NZN3 535 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PHF11Q9UIL8 331 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 UTS2RQ9UKP6 389 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CDC14AQ9UNH5 594 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PLA2G2DQ9UNK4 145 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 WBP11Q9Y2W2 641 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CFAP47Q6ZTR5 3102 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SCN3AQ9NY46 2000 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 IGKV3D-11A0A0A0MRZ8 115 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 A0A1W2PP18 115 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TRABD2BA6NFA1 517 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CCDC154A6NI56 674 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 FXYD1O00168 92 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SLC22A2O15244 555 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CTNSO60931 367 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 GPR75O95800 540 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 IL6P05231 212 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 C8BP07358 591 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 UMODP07911 640 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 HBQ1P09105 142 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 HOXB9P17482 250 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PTPN6P29350 595 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TLX1P31314 330 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 S100A3P33764 101 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CDKN2CP42773 168 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 GSTM5P46439 218 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MNAT1P51948 309 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CLNS1AP54105 237 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MANFP55145 182 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 KCNK10P57789 538 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 RPS18P62269 152 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SKP1P63208 163 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 HBA1P69905 142 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 IGLV3-21P80748 117 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 RHAGQ02094 409 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 ROM1Q03395 351 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CYLC2Q14093 348 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PUM1Q14671 1186 aaKnown RBP eCLIP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 RTP5Q14D33 572 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TGIF1Q15583 401 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 LTB4RQ15722 352 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 GTDC1Q4AE62 458 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MINDY4Q4G0A6 757 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 C4orf46Q504U0 113 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MLIPQ5VWP3 458 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 REP15Q6BDI9 236 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 VASNQ6EMK4 673 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 OR52E8Q6IFG1 317 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 NIPAL1Q6NVV3 410 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CD300LDQ6UXZ3 194 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 LANCL3Q6ZV70 420 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 ZNF551Q7Z340 670 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 HPS6Q86YV9 775 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MSRB3Q8IXL7 192 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CMIPQ8IY22 773 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 ULK2Q8IYT8 1036 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 CLEC4FQ8N1N0 589 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 GLB1L3Q8NCI6 653 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 FAM156AQ8NDB6 213 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 RP9Q8TA86 221 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 GTF2H4Q92759 462 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MR1Q95460 341 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MCUR1Q96AQ8 359 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 PPWD1Q96BP3 646 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 RCN3Q96D15 328 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 MTERF3Q96E29 417 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 ZNF764Q96H86 408 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 AMDHD1Q96NU7 426 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 OR1F2PQ96R84 312 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 OR52E6Q96RD3 313 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 SLC39A3Q9BRY0 314 aa4.41□□□□□ -1.7
SF3B1-208ENST00000470268 TACO1Q9BSH4 297 aaKnown RBP4.41□□□□□ -1.7
SF3B1-208ENST00000470268 INPP5KQ9BT40 448 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms