RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 OR10H1Q9Y4A9 318 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 ZNF451Q9Y4E5 1061 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 SCN2AQ99250 2005 aa13.22□□□□□ -0.29
SKA1-202ENST00000398452 ATRXP46100 2492 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 ZFHX4Q86UP3 3567 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 NUP210LQ5VU65 1888 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 NSG1A0A0A6YYJ2 146 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 IGHV3-20A0A0C4DH32 117 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 KLF7O75840 302 aaPredicted RBP13.21□□□□□ -0.29
SKA1-202ENST00000398452 BCHEP06276 602 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 ICAM2P13598 275 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 ATP6V1C1P21283 382 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 PCGF2P35227 344 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 MSX2P35548 267 aaPredicted RBP13.21□□□□□ -0.29
SKA1-202ENST00000398452 KRT20P35900 424 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 CLCN2P51788 898 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 CORO7P57737 925 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 AP2B1P63010 937 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 DMTNQ08495 405 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 MTX3Q5HYI7 312 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 REEP3Q6NUK4 255 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 HSDL2Q6YN16 418 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 KRT73Q86Y46 540 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 PTRH1Q86Y79 214 aaKnown RBP13.21□□□□□ -0.29
SKA1-202ENST00000398452 ZZZ3Q8IYH5 903 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 FAM13CQ8NE31 585 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 OR5D16Q8NGK9 328 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 RAB8BQ92930 207 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 NKD1Q969G9 470 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 UTP4Q969X6 686 aaKnown RBP13.21□□□□□ -0.29
SKA1-202ENST00000398452 C16orf58Q96GQ5 468 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 ZNF607Q96SK3 696 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 SPATA5L1Q9BVQ7 753 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 PCDHAC1Q9H158 963 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 A4GALTQ9NPC4 353 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 ASCL3Q9NQ33 180 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 DUSP22Q9NRW4 184 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 GIN1Q9NXP7 522 aa13.21□□□□□ -0.29
SKA1-202ENST00000398452 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 LOC102723996A0A087X1L8 192 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 LOC101059948A0A1B0GTJ6 334 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 C2orf92A0A1B0GVN3 265 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 HMGN4O00479 90 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 ARPC2O15144 300 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 TNFRSF21O75509 655 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 SEC24DO94855 1032 aaPredicted RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 UMODP07911 640 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 ARAFP10398 606 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 BMP2P12643 396 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 GGT1P19440 569 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 GABRA3P34903 492 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 MVDP53602 400 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 PSMD4P55036 377 aaKnown RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 POLE2P56282 527 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 NRG3P56975 720 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 FOXL2P58012 376 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 PSPHP78330 225 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 POU6F2P78424 691 aaPredicted RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 MYBPC3Q14896 1274 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 BTBD16Q32M84 506 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 LRRC23Q53EV4 343 aaPredicted RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 NDUFAF7Q7L592 441 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 PATL1Q86TB9 770 aaKnown RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 BHLHE22Q8NFJ8 381 aaPredicted RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 C16orf52Q8NHV5 167 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 NFKBIDQ8NI38 313 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 ZNF721Q8TF20 911 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 MAL2Q969L2 176 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 C8orf44Q96CB5 159 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 GIMAP5Q96F15 307 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 LMF2Q9BU23 707 aaKnown RBP13.2□□□□□ -0.3
SKA1-202ENST00000398452 ZNF700Q9H0M5 742 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 RPS6KA6Q9UK32 745 aa13.2□□□□□ -0.3
SKA1-202ENST00000398452 NUP214P35658 2090 aaPredicted RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 HRKO00198 91 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SERPINB7O75635 380 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SORBS2O94875 1100 aaKnown RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 PSMG1O95456 288 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 DDAH2O95865 285 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 NCK1P16333 377 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 S1PR1P21453 382 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 RFX3P48380 749 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 EMDP50402 254 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SLC37A1P57057 533 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SLC26A5P58743 744 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 RPS18P62269 152 aaKnown RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 KPNB1Q14974 876 aaKnown RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 LAPTM4AQ15012 233 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 DUSP5Q16690 384 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 DECR1Q16698 335 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 PRAMEF8Q5VWM4 474 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 PRAMEF7Q5VXH5 474 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 LCN8Q6JVE9 175 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 CYP2R1Q6VVX0 501 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 GPR155Q7Z3F1 870 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 ZNF615Q8N8J6 731 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SLC16A11Q8NCK7 471 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 BBS10Q8TAM1 723 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 RASSF5Q8WWW0 418 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 LZICQ8WZA0 190 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms