RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, human

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-206	ENST00000508465	INPP5J	Q15735	1006 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	NSDHL	Q15738	373 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	PDK4	Q16654	411 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	PFKFB4	Q16877	469 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TUBB8	Q3ZCM7	444 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	GLE1	Q53GS7	698 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TEX35	Q5T0J7	233 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	LCE1E	Q5T753	118 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	VWA5B1	Q5TIE3	1220 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	AGAP7P	Q5VUJ5	663 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	GARNL3	Q5VVW2	1013 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SULT1C3	Q6IMI6	304 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TMIGD1	Q6UXZ0	262 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	RPS27L	Q71UM5	84 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	NDUFAF7	Q7L592	441 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	CPEB2	Q7Z5Q1	589 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ANKRD37	Q7Z713	158 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ADAMTSL2	Q86TH1	951 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TBC1D1	Q86TI0	1168 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	IFT20	Q8IY31	132 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	CENPL	Q8N0S6	344 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TBC1D19	Q8N5T2	526 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TEX9	Q8N6V9	391 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	CEP112	Q8N8E3	955 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	C1orf162	Q8NEQ5	155 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TRPV3	Q8NET8	790 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	VPS37A	Q8NEZ2	397 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	DNAJB14	Q8TBM8	379 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	STAG3L4	Q8TBR4	150 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	NT5C	Q8TCD5	201 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	BRIX1	Q8TDN6	353 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ADAMTS15	Q8TE58	950 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	DOK4	Q8TEW6	326 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	DCAKD	Q8WVC6	231 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SLC44A1	Q8WWI5	657 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	METTL21A	Q8WXB1	218 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	TSLP	Q969D9	159 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	REPS1	Q96D71	796 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	PHF21B	Q96EK2	531 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	HSPBAP1	Q96EW2	488 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	AGAP4	Q96P64	663 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	GPR78	Q96P69	363 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	IP6K3	Q96PC2	410 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ATOH8	Q96SQ7	321 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	FMO2	Q99518	471 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	AIF1L	Q9BQI0	150 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SORBS1	Q9BX66	1292 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	LHPP	Q9H008	270 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	CDC42EP4	Q9H3Q1	356 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	PELI2	Q9HAT8	420 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SLAMF7	Q9NQ25	335 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	DNAJC11	Q9NVH1	559 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	STMN3	Q9NZ72	180 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	CPSF2	Q9P2I0	782 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	ANAPC2	Q9UJX6	822 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	NXT1	Q9UKK6	140 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	LRP12	Q9Y561	859 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	PCDHGA9	Q9Y5G4	932 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	GPR45	Q9Y5Y3	372 aa		4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SPEN	Q96T58	3664 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	UBR5	O95071	2799 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-206	ENST00000508465	SPTA1	P02549	2419 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	IGLV3-12	A0A075B6K2	115 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465		A0A087WUV0	522 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	IGHV1-45	A0A0A0MS14	117 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	ANKDD1B	A6NHY2	528 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	WASHC1	A8K0Z3	465 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	TRIM49D1	C9J1S8	452 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PRR23D1	E9PI22	279 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465		H0YIG0	161 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	GOLGA8R	I6L899	631 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	KIF2A	O00139	706 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	RTCA	O00442	366 aa	Known RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	SOCS2	O14508	198 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PRPF4	O43172	522 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	ERI3	O43414	337 aa	Known RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	DPM1	O60762	260 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	KERA	O60938	352 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	WISP2	O76076	250 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	NSA2	O95478	260 aa	Known RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	TBX6	O95947	436 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	HP	P00738	406 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	SERPINA6	P08185	405 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	INHBA	P08476	426 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	SLC35G6	P0C7Q6	338 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	NHLRC4	P0CG21	123 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	C8orf89	P0DMQ9	161 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	SMIM10L1	P0DMW3	83 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	GFAP	P14136	432 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	TSPAN8	P19075	237 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	GNLY	P22749	145 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	GCA	P28676	217 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PPP2R1B	P30154	601 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PHB	P35232	272 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	UQCRFS1	P47985	274 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	PIK3CG	P48736	1102 aa		4.23	□□□□□ -1.73
NUP54-206	ENST00000508465	SERPINB8	P50452	374 aa		4.23	□□□□□ -1.73

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