RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HS6ST1O60243 411 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 KLF7O75840 302 aaPredicted RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 HIST1H1TP22492 207 aaPredicted RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 CRATP43155 626 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR1D4P47884 311 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MVDP53602 400 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 BTN3A2P78410 334 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TLE3Q04726 772 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 PPP1R8Q12972 351 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 C1orf189Q5VU69 101 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TTC23Q5W5X9 447 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR2T5Q6IEZ7 315 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 AMER3Q8N944 861 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 C11orf65Q8NCR3 313 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ZNF555Q8NEP9 628 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR9A4Q8NGU2 314 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR2T29Q8NH02 315 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR51Q1Q8NH59 317 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 THAP4Q8WY91 577 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MAL2Q969L2 176 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 NMD3Q96D46 503 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 F2RL3Q96RI0 385 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ZNF717Q9BY31 904 aaPredicted RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 YTHDF1Q9BYJ9 559 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 GABARAPL1Q9H0R8 117 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 SEMA3GQ9NS98 782 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 SLC22A11Q9NSA0 550 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 GPATCH2Q9NW75 528 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 FAM118AQ9NWS6 357 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 VNN3Q9NY84 501 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TAS2R9Q9NYW1 312 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TRPC4Q9UBN4 977 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 PHF11Q9UIL8 331 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MRPS33Q9Y291 106 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 RAXQ9Y2V3 346 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 U3KQV3 271 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TEX51A0A1B0GUA7 166 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 hCG_2039718K7EN88 272 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TAF4O00268 1085 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TNFRSF21O75509 655 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MED26O95402 600 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ZGLP1P0C6A0 271 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 RNH1P13489 461 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 LIFP15018 202 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 DDCP20711 480 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ATP5A1P25705 553 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 BSGP35613 385 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 CRYBA2P53672 197 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MAPK12P53778 367 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 PLA2G16P53816 162 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TMPRSS3P57727 454 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TRA2BP62995 288 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 VLDLRP98155 873 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 FADDQ13158 208 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 SLC9A5Q14940 896 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 PRSS53Q2L4Q9 553 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 COX20Q5RI15 118 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MLIPQ5VWP3 458 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ANKRD34AQ69YU3 496 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 PIWIL3Q7Z3Z3 882 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 THAP5Q7Z6K1 395 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 NUDT13Q86X67 352 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 OR52N2Q8NGI0 321 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ZCCHC10Q8TBK6 192 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 STT3BQ8TCJ2 826 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 MACROD1Q9BQ69 325 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TRIM4Q9C037 500 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 AMBRA1Q9C0C7 1298 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ING2Q9H160 280 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 KLHL31Q9H511 634 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ADPRHL2Q9NX46 363 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 LYARQ9NX58 379 aaKnown RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 C3orf18Q9UK00 162 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 BAG5Q9UL15 447 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ORC6Q9Y5N6 252 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 CEPT1Q9Y6K0 416 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ADAMTS20P59510 1910 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 NUP214P35658 2090 aaPredicted RBP9.54□□□□□ -0.88
VPS53-202ENST00000389040 A0A1W2PRB8 838 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 SGK494L7N484 410 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 RTCAO00442 366 aaKnown RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 CLDN4O14493 209 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 SUV39H1O43463 412 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 ETFAP13804 333 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 PRKACGP22612 351 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 AQP1P29972 269 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 TLX1P31314 330 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 CHI3L1P36222 383 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 PIGAP37287 484 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 FOLR3P41439 243 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 SSR2P43308 183 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 ARHGDIAP52565 204 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 RAB8AP61006 207 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 TGIF1Q15583 401 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 RFX4Q33E94 735 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 GCNT6Q5T4J0 391 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 FAM199XQ6PEV8 388 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 CCDC81Q6ZN84 652 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 COX15Q7KZN9 410 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 UBE3DQ7Z6J8 389 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms