RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF578Q96N58 590 aaPredicted RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 SPSB2Q99619 263 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 P2RX2Q9UBL9 471 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 ANGPT4Q9Y264 503 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 PCDHGA3Q9Y5H0 932 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 SYNDIG1LA6NDD5 238 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 C9J4A7 227 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 SSTR4P31391 388 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 MAN2A2P49641 1150 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 ELAVL1Q15717 326 aaKnown RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 LANCL3Q6ZV70 420 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 GALNT10Q86SR1 603 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 SLC44A2Q8IWA5 706 aaPredicted RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 PTPMT1Q8WUK0 201 aaPredicted RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 DCLRE1BQ9H816 532 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 WDR54Q9H977 334 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 V9GYQ6 96 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 TMEM247A6NEH6 219 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 C5orf58C9J3I9 102 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 ASNA1O43681 348 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 AQP1P29972 269 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 ZNF155Q12901 538 aaPredicted RBP28.5■■■□□ 2.15
CTCF-203ENST00000566078 TMEM164Q5U3C3 297 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 SLC30A8Q8IWU4 369 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 OR52E4Q8NGH9 312 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 ADAMTS15Q8TE58 950 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 SLC38A5Q8WUX1 472 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 SLC9A6Q92581 669 aa28.5■■■□□ 2.15
CTCF-203ENST00000566078 NXT1Q9UKK6 140 aaKnown RBP28.5■■■□□ 2.15
CTCF-203ENST00000566078 DYRK3O43781 588 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 SERPINA1P01009 418 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 TFPTP0C1Z6 253 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 SLC5A2P31639 672 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 AP2B1P63010 937 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 ZFP1Q6P2D0 407 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 ZNF517Q6ZMY9 492 aaPredicted RBP28.49■■■□□ 2.15
CTCF-203ENST00000566078 TMEM19Q96HH6 336 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 RNPEPL1Q9HAU8 725 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 FOXJ2Q9P0K8 574 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 C3orf18Q9UK00 162 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 PCDHGA8Q9Y5G5 932 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 CLCA3PQ9Y6N3 262 aa28.49■■■□□ 2.15
CTCF-203ENST00000566078 CNOT1A5YKK6 2376 aaKnown RBP28.48■■■□□ 2.15
CTCF-203ENST00000566078 DHRS12A0PJE2 317 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 FAM149AA5PLN7 773 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 SLC28A2O43868 658 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 ALOX12BO75342 701 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 DLGAP3O95886 979 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 ACP2P11117 423 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 KDELR2P33947 212 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 EMP2P54851 167 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 FUT7Q11130 342 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 INTS11Q5TA45 600 aaKnown RBP28.48■■■□□ 2.15
CTCF-203ENST00000566078 REEP3Q6NUK4 255 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 C6orf15Q6UXA7 325 aaPredicted RBP28.48■■■□□ 2.15
CTCF-203ENST00000566078 TMPRSS12Q86WS5 348 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 CACTIN-AS1Q8N1I8 211 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 GOLM1Q8NBJ4 401 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 SLC16A11Q8NCK7 471 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 CRB3Q9BUF7 120 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 DCAF13Q9NV06 445 aaKnown RBP28.48■■■□□ 2.15
CTCF-203ENST00000566078 KCNE3Q9Y6H6 103 aa28.48■■■□□ 2.15
CTCF-203ENST00000566078 PRAMEF27A3QJZ7 478 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 SLC30A4O14863 429 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 GFRA3O60609 400 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 PRAMEF2O60811 474 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 PSMA4P25789 261 aaKnown RBP28.47■■■□□ 2.15
CTCF-203ENST00000566078 NCF4Q15080 339 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 MAPK11Q15759 364 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 SYPL1Q16563 259 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 ZCCHC12Q6PEW1 402 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 CDRT4Q8N9R6 151 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 CANT1Q8WVQ1 401 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 METTL21AQ8WXB1 218 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 DUXAA6NLW8 204 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 H3BNX3 289 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 GPIP06744 558 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 NR2F1P10589 423 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 FUT5Q11128 374 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 MYBPC3Q14896 1274 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 RPS26P11Q5JNZ5 115 aaPredicted RBP28.47■■■□□ 2.15
CTCF-203ENST00000566078 ANKRD37Q7Z713 158 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 ADGRG5Q8IZF4 528 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 OR14A16Q8NHC5 309 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 CDS1Q92903 461 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 SLCO4A1Q96BD0 722 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 DUS3LQ96G46 650 aaKnown RBP28.47■■■□□ 2.15
CTCF-203ENST00000566078 SLC35A4Q96G79 324 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 OR10A5Q9H207 317 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 FOLH1BQ9HBA9 442 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 NKX1-2Q9UD57 310 aaPredicted RBP28.47■■■□□ 2.15
CTCF-203ENST00000566078 ANAPC2Q9UJX6 822 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 AURKCQ9UQB9 309 aa28.47■■■□□ 2.15
CTCF-203ENST00000566078 HEMK1Q9Y5R4 338 aaPredicted RBP28.47■■■□□ 2.15
CTCF-203ENST00000566078 CEP250Q9BV73 2442 aa28.46■■■□□ 2.15
CTCF-203ENST00000566078 GCM2O75603 506 aaPredicted RBP28.46■■■□□ 2.15
CTCF-203ENST00000566078 AGR2O95994 175 aa28.46■■■□□ 2.15
CTCF-203ENST00000566078 ALOX5P09917 674 aa28.46■■■□□ 2.15
CTCF-203ENST00000566078 EMDP50402 254 aa28.46■■■□□ 2.15
CTCF-203ENST00000566078 DUSP5Q16690 384 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms