RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 LRRC70Q7Z2Q7 622 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 VTCN1Q7Z7D3 282 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 TAC4Q86UU9 113 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 AMIGO3Q86WK7 504 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 LRRC56Q8IYG6 542 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 L3MBTL4Q8NA19 623 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 OR11H7Q8NGC8 314 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 OR8D4Q8NGM9 314 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 OR5M3Q8NGP4 307 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 GOT1L1Q8NHS2 421 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 PIH1D2Q8WWB5 315 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 NR4A3Q92570 626 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ORAI1Q96D31 301 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ZNF419Q96HQ0 510 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 OR4K3Q96R72 315 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 PANX1Q96RD7 426 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 NPAS1Q99742 590 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ATF6BQ99941 703 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 TCEAL7Q9BRU2 100 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 WACQ9BTA9 647 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 CINPQ9BW66 212 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 NLNQ9BYT8 704 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 SLC25A32Q9H2D1 315 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 TPT1P8Q9HAU6 139 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 AMBNQ9NP70 447 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 NT5MQ9NPB1 228 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 FANCFQ9NPI8 374 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 EQTNQ9NQ60 294 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 PRDM7Q9NQW5 492 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ACER3Q9NUN7 267 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ZSCAN32Q9NX65 697 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 SLCO1C1Q9NYB5 712 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 FLRT1Q9NZU1 646 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 HCN3Q9P1Z3 774 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 SEC14L3Q9UDX4 400 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 TESQ9UGI8 421 aaKnown RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 ZNF222Q9UK12 451 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ING1Q9UK53 422 aaPredicted RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 OGDHLQ9ULD0 1010 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 ZFR2Q9UPR6 939 aaKnown RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 RUVBL1Q9Y265 456 aaKnown RBP6.34□□□□□ -1.39
USP28-207ENST00000538475 ENPP4Q9Y6X5 453 aa6.34□□□□□ -1.39
USP28-207ENST00000538475 PLXNB3Q9ULL4 1909 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 IGLV3-10A0A075B6K4 115 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 LINC00854A0A1B0GVQ3 168 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SLC22A23A1A5C7 686 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 TRAPPC13A5PLN9 417 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 RRN3P2A6NIE6 340 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 UPK3BL1B0FP48 263 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 D6RAR5 112 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 UPK3BL2E5RIL1 263 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 NEDD8-MDP1E9PL57 170 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 H3BUI4 141 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 FAAHO00519 579 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 CASKO14936 926 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 GSTZ1O43708 216 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 SELENOFO60613 162 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 EFCAB14O75071 495 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 PSIP1O75475 530 aaKnown RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 GADD45GO95257 159 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SOD1P00441 154 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SMIM6P0DI80 62 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 NPR2P20594 1047 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ACSL1P33121 698 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 CNR2P34972 360 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 PITPNBP48739 271 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 MEOX2P50222 304 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 GPR143P51810 404 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 CRISP3P54108 245 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 PNLIPRP1P54315 467 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 LILRA4P59901 499 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SPIBQ01892 262 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 TAP2Q03519 686 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 CSTF1Q05048 431 aaKnown RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 ITKQ08881 620 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SEC23BQ15437 767 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 NTRK2Q16620 822 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 EXOC3L2Q2M3D2 409 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 GTDC1Q4AE62 458 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 FLYWCH1Q4VC44 716 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ELFN2Q5R3F8 820 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 PDSS1Q5T2R2 415 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ARMC12Q5T9G4 340 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 METTL11BQ5VVY1 283 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ZNF770Q6IQ21 691 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 KIAA1161Q6NSJ0 714 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 UNC5DQ6UXZ4 953 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 WASH2PQ6VEQ5 465 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ZNF600Q6ZNG1 722 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 RASSF6Q6ZTQ3 369 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 UTS2BQ765I0 119 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 RAB11FIP2Q7L804 512 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SHFQ7M4L6 423 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ZNF551Q7Z340 670 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 ATG4DQ86TL0 474 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 LDB1Q86U70 411 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 OAFQ86UD1 273 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 TMEM17Q86X19 198 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 PDZD9Q8IXQ8 264 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms