RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SSBP3Q9BWW4 388 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 MS4A8Q9BY19 250 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 MRPL1Q9BYD6 325 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 RAB33BQ9H082 229 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 KCNH6Q9H252 994 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ACTL8Q9H568 366 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 BRF2Q9HAW0 419 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SLC52A3Q9NQ40 469 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 LHX9Q9NQ69 397 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 PFDN4Q9NQP4 134 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 VPS29Q9UBQ0 182 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 DKK4Q9UBT3 224 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 EPHA6Q9UF33 1036 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 AP1M2Q9Y6Q5 423 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SPTBP11277 2137 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 A0A0J9YVX5 310 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 LOC100653049A0A140TA62 436 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 A0A1W2PQM1 296 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 EME2A4GXA9 379 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 LRIT2A6NDA9 550 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ANKDD1BA6NHY2 528 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 C9JVG2 144 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 H0YGG7 62 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 RTCAO00442 366 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 P2RX6O15547 441 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ZW10O43264 779 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 DHHO43323 396 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 EEDO75530 441 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 KRT34O76011 436 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 CBX6O95503 412 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 LMNAP02545 664 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 C9P02748 559 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ZNF883P0CG24 379 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ALPPL2P10696 532 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 G6PDP11413 515 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 CDH3P22223 829 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 BSGP35613 385 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 AHRP35869 848 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 GABRA4P48169 554 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 MRPL19P49406 292 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 ATP4BP51164 291 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ARF3P61204 181 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 UFM1P61960 85 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 RPL38P63173 70 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 RELAQ04206 551 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.35□□□□□ -1.87
MCF2-202ENST00000370573 BNIP1Q12981 228 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 DUSP8Q13202 625 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SQLEQ14534 574 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 PUM1Q14671 1186 aaKnown RBP eCLIP3.35□□□□□ -1.87
MCF2-202ENST00000370573 IMPG1Q17R60 797 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SMU1Q2TAY7 513 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ADPRMQ3LIE5 342 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 AGKQ53H12 422 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 LACTB2Q53H82 288 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 KHDRBS2Q5VWX1 349 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 TMEM200BQ69YZ2 307 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 NOXRED1Q6NXP6 359 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SLC30A6Q6NXT4 461 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ZNF585AQ6P3V2 769 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 KLHL35Q6PF15 583 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 CYP20A1Q6UW02 462 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 METTL4Q8N3J2 472 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 KRTCAP2Q8N6L1 136 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 C1orf52Q8N6N3 182 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 AMER3Q8N944 861 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 FNDC5Q8NAU1 212 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 CLHC1Q8NHS4 586 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ATOH1Q92858 354 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 C3orf49Q96BT1 292 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 NSL1Q96IY1 281 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 EGLN2Q96KS0 407 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 TGM7Q96PF1 710 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 SERPINI1Q99574 410 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 NUDT22Q9BRQ3 303 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 EBPLQ9BY08 206 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ZNF717Q9BY31 904 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 SDR39U1Q9NRG7 319 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 FBXO34Q9NWN3 711 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ASIC5Q9NY37 505 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ANKMY1Q9P2S6 941 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 ADAM29Q9UKF5 820 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 MRPS2Q9Y399 296 aaKnown RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 POLR3HQ9Y535 204 aaPredicted RBP3.35□□□□□ -1.87
MCF2-202ENST00000370573 CAPN7Q9Y6W3 813 aa3.35□□□□□ -1.87
MCF2-202ENST00000370573 A0A0G2JN53 185 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A20PA6NIJ5 464 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 ZNF785A8K8V0 405 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 PSMD12O00232 456 aaPredicted RBP3.34□□□□□ -1.87
MCF2-202ENST00000370573 PLPP1O14494 284 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 DNAJB6O75190 326 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 SLC43A1O75387 559 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 ERAL1O75616 437 aaKnown RBP3.34□□□□□ -1.87
MCF2-202ENST00000370573 GBAP04062 536 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 SERPIND1P05546 499 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 SMIM10L1P0DMW3 83 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 COX4I1P13073 169 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 IDO1P14902 403 aa3.34□□□□□ -1.87
MCF2-202ENST00000370573 EZRP15311 586 aaKnown RBP3.34□□□□□ -1.87
MCF2-202ENST00000370573 SDC1P18827 310 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms