RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SLC6A18Q96N87 628 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 OR7D2Q96RA2 312 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 GPA33Q99795 319 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 PINK1Q9BXM7 581 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 BOLA2-SMG1P6H3BVE0 249 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 ARHGAP33O14559 1287 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 CASC3O15234 703 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 HOXC4P09017 264 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 HOXB2P14652 356 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 RELAQ04206 551 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 PRAMEF8Q5VWM4 474 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 PRAMEF7Q5VXH5 474 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 ENPP7Q6UWV6 458 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 LINC00471Q8N535 108 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 NUP43Q8NFH3 380 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 TAPBPLQ9BX59 468 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 CCDC59Q9P031 241 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 ZNF624Q9P2J8 865 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 CA5BQ9Y2D0 317 aa19.58■□□□□ 0.73
CCDC88B-203ENST00000359902 CCRL2O00421 344 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 BTN3A3O00478 584 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 NARSO43776 548 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 CSTF2P33240 577 aaKnown RBP eCLIP19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 KIAA1024LP59773 190 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 NCF4Q15080 339 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 SSX1Q16384 188 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 OCLNQ16625 522 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 C1orf94Q6P1W5 598 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 DGLUCYQ7Z3D6 616 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 IQCHQ86VS3 1027 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 ZG16BQ96DA0 208 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 TMEM80Q96HE8 168 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 C6orf62Q9GZU0 229 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 EQTNQ9NQ60 294 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 CTPS2Q9NRF8 586 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 GIMAP4Q9NUV9 329 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 TVP23BQ9NYZ1 205 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 CLEC2DQ9UHP7 191 aa19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 LSM2Q9Y333 95 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-203ENST00000359902 KLF8O95600 359 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 CDH3P22223 829 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 TGM1P22735 817 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 CD40LGP29965 261 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 SNRPNP63162 240 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 RHAGQ02094 409 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 NDUFA9Q16795 377 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 TPRG1LQ5T0D9 272 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 MFSD4BQ5TF39 518 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 PPP2R2DQ66LE6 453 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 RD3Q7Z3Z2 195 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 CCL4L1Q8NHW4 92 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 ASB12Q8WXK4 309 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 OPALINQ96PE5 141 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 SLC38A1Q9H2H9 487 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 C3orf14Q9HBI5 128 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 LYARQ9NX58 379 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 RPL36Q9Y3U8 105 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 ZNF780BQ9Y6R6 833 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 AGAP5A6NIR3 686 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 H0Y8X5 98 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 PRKYO43930 277 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 CKMT1AP12532 417 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 CHRNEQ04844 493 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 ZNF91Q05481 1191 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 TGM3Q08188 693 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 SFSWAPQ12872 951 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 LTB4RQ15722 352 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 NRROSQ86YC3 692 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 MINDY2Q8NBR6 621 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 KAT2AQ92830 837 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 NEURL2Q9BR09 285 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 PRR14Q9BWN1 585 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 FBRSQ9HAH7 460 aa19.57■□□□□ 0.72
CCDC88B-203ENST00000359902 KRBA1A5PL33 1030 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 KIAA0513O60268 411 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 EGFP01133 1207 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 NDUFS1P28331 727 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GIPRP48546 466 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 RPS15AP62244 130 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GINS1Q14691 196 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 ZNF311Q5JNZ3 666 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 ENTPD8Q5MY95 495 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 FBXO42Q6P3S6 717 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 CACTIN-AS1Q8N1I8 211 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 CYP4Z2PQ8N1L4 340 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 CLIP4Q8N3C7 705 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 FAM26EQ8N5C1 309 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TSACCQ96A04 125 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GAL3ST3Q96A11 431 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TSSK6Q9BXA6 273 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 POLDIP3Q9BY77 421 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 SRMSQ9H3Y6 488 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TICRRQ7Z2Z1 1910 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TRBV23OR9-2A0A075B6M9 112 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 TLX2O43763 284 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 SCG5P05408 212 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 ZNF888P0CJ79 500 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 PCYT1AP49585 367 aa19.56■□□□□ 0.72
CCDC88B-203ENST00000359902 RPS3AP61247 264 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms