RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OR2L5Q8NG80 312 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 OR52N1Q8NH53 320 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 GGHQ92820 318 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 IL12RB2Q99665 862 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 MICU1Q9BPX6 476 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 URM1Q9BTM9 101 aaKnown RBP4.46□□□□□ -1.69
SCN1A-220ENST00000641603 SLCO3A1Q9UIG8 710 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 PNPP00491 289 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 UGT8Q16880 541 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 MINDY4Q4G0A6 757 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 GPR155Q7Z3F1 870 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 CCDC71LQ8N9Z2 235 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 OR6T1Q8NGN1 323 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 OR5M3Q8NGP4 307 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 HCAR2Q8TDS4 363 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 DDX1Q92499 740 aaKnown RBP4.46□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35A5Q9BS91 424 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 OR51I1Q9H343 314 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 TUBB1Q9H4B7 451 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 VNN3Q9NY84 501 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 DIMT1Q9UNQ2 313 aaKnown RBP4.46□□□□□ -1.69
SCN1A-220ENST00000641603 MED31Q9Y3C7 131 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 TEX13DA0A0J9YY54 714 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ELOA3DA6NLF2 546 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SLC33A1O00400 549 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TNFRSF10BO14763 440 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GPR137BO60478 399 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF823P16415 610 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MPIP34949 423 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ELOA3BQ3SY89 546 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CEACAM19Q7Z692 300 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ENTHD1Q8IYW4 607 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ELOA3Q8NG57 546 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FAM46BQ96A09 425 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZC3HAV1LQ96H79 300 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM74Q96NL1 305 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CDK15Q96Q40 435 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 WRAP53Q9BUR4 548 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 C11orf49Q9H6J7 331 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DNAJC27Q9NZQ0 273 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TRIM77I1YAP6 450 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SLC25A14O95258 325 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GLUD1P00367 558 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 G6PDP11413 515 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DRD2P14416 443 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DUSP4Q13115 394 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DHCR24Q15392 516 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 YIF1BQ5BJH7 314 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PLPP5Q8NEB5 264 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DNAAF1Q8NEP3 725 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR52N2Q8NGI0 321 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LMO3Q8TAP4 145 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PDXPQ96GD0 296 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FERD3LQ96RJ6 166 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 WDR18Q9BV38 432 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CD244Q9BZW8 370 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PCED1AQ9H1Q7 454 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LMAN1LQ9HAT1 526 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ARL5AQ9Y689 179 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 E7EQ34 232 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ARHGAP33O14559 1287 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GOSR2O14653 212 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PAGE1O75459 146 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CDK14O94921 469 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CLIC3O95833 236 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MGMTP16455 207 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF20P17024 532 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 EEF1A1P68104 462 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 DLK1P80370 383 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 EEF1A2Q05639 463 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 EEF1A1P5Q5VTE0 462 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 OR10K2Q6IF99 312 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 C19orf35Q6ZS72 473 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TMUB2Q71RG4 321 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PIWIL3Q7Z3Z3 882 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ADIPOR2Q86V24 386 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 FAM71CQ8NEG0 241 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PGLYRP2Q96PD5 576 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GPER1Q99527 375 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PKMYT1Q99640 499 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 BARD1Q99728 777 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TEX101Q9BY14 249 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHB14Q9Y5E9 798 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 NDUFV2P19404 249 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 CSNK2A2P19784 350 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ASPAP45381 313 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MPPED2Q15777 294 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 SOHLH1Q5JUK2 328 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TRMT11Q7Z4G4 463 aaKnown RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 RDH10Q8IZV5 341 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF366Q8N895 744 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GLYATL1Q969I3 302 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 MOCOSQ96EN8 888 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 LIN37Q96GY3 246 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TAPBPLQ9BX59 468 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 C11orf54Q9H0W9 315 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-220ENST00000641603 GPR83Q9NYM4 423 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 TMPRSS11EQ9UL52 423 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 COPS3Q9UNS2 423 aa4.46□□□□□ -1.7
SCN1A-220ENST00000641603 ASF1AQ9Y294 204 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms