RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CLEC6AQ6EIG7 209 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 FAM111BQ6SJ93 734 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 FAM47EQ6ZV65 393 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 MAMDC2Q7Z304 686 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 TRIM46Q7Z4K8 759 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 DND1Q8IYX4 353 aaKnown RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 TAGAPQ8N103 731 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 LRRC25Q8N386 305 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF441Q8N8Z8 693 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 C11orf24Q96F05 449 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 TMEM109Q9BVC6 243 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 RRAGDQ9NQL2 400 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-206ENST00000579558 SIRT5Q9NXA8 310 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 MAT2BQ9NZL9 334 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 TINAGQ9UJW2 476 aa22.05■■□□□ 1.12
SHMT1-206ENST00000579558 ACOT7O00154 380 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 ZNHIT1O43257 154 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 CDC40O60508 579 aaKnown RBP eCLIP22.04■■□□□ 1.12
SHMT1-206ENST00000579558 FBXO45P0C2W1 286 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 GSTM5P46439 218 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 PPIAP62937 165 aaKnown RBP22.04■■□□□ 1.12
SHMT1-206ENST00000579558 MAP4K2Q12851 820 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 CMPK2Q5EBM0 449 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 SLC22A10Q63ZE4 541 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 HIST2H2BCQ6DN03 193 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 Q6ZPB1 254 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-206ENST00000579558 FAM13CQ8NE31 585 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 ADCY4Q8NFM4 1077 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 CDC26Q8NHZ8 85 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 TCP10LQ8TDR4 215 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 TP53INP1Q96A56 240 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 EXOSC8Q96B26 276 aaKnown RBP22.04■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF681Q96N22 645 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 TRMOQ9BU70 441 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 BCAP29Q9UHQ4 241 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 MYO7BQ6PIF6 2116 aa22.04■■□□□ 1.12
SHMT1-206ENST00000579558 FAM166BA8MTA8 275 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 RSL1D1O76021 490 aaKnown RBP22.03■■□□□ 1.12
SHMT1-206ENST00000579558 S1PR1P21453 382 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 DNASE1L1P49184 302 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF763Q0D2J5 394 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 MGAT2Q10469 447 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 LTB4RQ15722 352 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 KRT71Q3SY84 523 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 SLC22A16Q86VW1 577 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 CHERPQ8IWX8 916 aaKnown RBP22.03■■□□□ 1.12
SHMT1-206ENST00000579558 OR52N2Q8NGI0 321 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 PAQR8Q8TEZ7 354 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 MECRQ9BV79 373 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 TTTY12Q9BZ98 90 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 SH2D2AQ9NP31 389 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 GIMAP4Q9NUV9 329 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 RAB21Q9UL25 225 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 FIS1Q9Y3D6 152 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 NBPF19A0A087WUL8 3843 aa22.03■■□□□ 1.12
SHMT1-206ENST00000579558 AZIN1O14977 448 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 PIGAP37287 484 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 EXOSC7Q15024 291 aaKnown RBP22.02■■□□□ 1.12
SHMT1-206ENST00000579558 MTFR2Q6P444 385 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 TMEM64Q6YI46 380 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 RGS9BPQ6ZS82 235 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 SAMD14Q8IZD0 417 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-206ENST00000579558 OR10G3Q8NGC4 313 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 OR5M3Q8NGP4 307 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 ADIPOR1Q96A54 375 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 CCDC120Q96HB5 630 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 DEFB127Q9H1M4 99 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 IL1RL2Q9HB29 575 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 ZNF639Q9UID6 485 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 ENTPD4Q9Y227 616 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 CFL2Q9Y281 166 aa22.02■■□□□ 1.12
SHMT1-206ENST00000579558 POLR3HQ9Y535 204 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-206ENST00000579558 GTF3C1Q12789 2109 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 A0A1B0GTH9 108 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CAPN14A8MX76 684 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 SLC28A1O00337 649 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 PDE9AO76083 593 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 ESRRAP11474 423 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CREB1P16220 341 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 PCSK2P16519 638 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 GPX3P22352 226 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 NRG3P56975 720 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 ZNF844Q08AG5 666 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 NTRK2Q16620 822 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 PRAMEF20Q5VT98 475 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 FGD2Q7Z6J4 655 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CCDC116Q8IYX3 515 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 FBXW8Q8N3Y1 598 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 C17orf47Q8NEP4 570 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 FAM76AQ8TAV0 307 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CTHRC1Q96CG8 243 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 SLC35C2Q9NQQ7 365 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 TUBA8Q9NY65 449 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-206ENST00000579558 EHD3Q9NZN3 535 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CNIH4Q9P003 139 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 DTX4Q9Y2E6 619 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 NPFFR2Q9Y5X5 522 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 PTGDR2Q9Y5Y4 395 aa22.01■■□□□ 1.11
SHMT1-206ENST00000579558 CHCHD2Q9Y6H1 151 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-206ENST00000579558 PRRG2O14669 202 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms