RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ERVK-6Q9BXR3 956 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 SPNS1Q9H2V7 528 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 PLAC1Q9HBJ0 212 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 LHX9Q9NQ69 397 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 ERVK-18Q9QC07 812 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 FBXW2Q9UKT8 454 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 ASB1Q9Y576 335 aa7.46□□□□□ -1.21
LIMCH1-219ENST00000514096 USP9XQ93008 2570 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 HIVEP3Q5T1R4 2406 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A0J9YY10 115 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM172BPA6NC97 362 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 E7ENX8 843 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM227AF5H4B4 570 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 H7C0S8 307 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 GMFGO60234 142 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 LCMT2O60294 686 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 GMDSO60547 372 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SUPT7LO94864 414 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 MLNP12872 115 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 HSD3B2P26439 372 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 IMPA1P29218 277 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 KCNC1P48547 511 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 OC90Q02509 493 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 TAP2Q03519 686 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 ZFP36L1Q07352 338 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SSX9Q7RTT3 188 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC22A16Q86VW1 577 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 NUDT13Q86X67 352 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC22A15Q8IZD6 547 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 TEX19Q8NA77 164 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 C2CD4AQ8NCU7 369 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 OR2L3Q8NG85 312 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SMPDL3AQ92484 453 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 TANKQ92844 425 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 NEIL2Q969S2 332 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SSX3Q99909 188 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 CRB3Q9BUF7 120 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 CADM1Q9BY67 442 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 REXO4Q9GZR2 422 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 P2RY12Q9H244 342 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 ATP13A2Q9NQ11 1180 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 SMOXQ9NWM0 555 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 PILRAQ9UKJ1 303 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 CLEC4AQ9UMR7 237 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 WASF3Q9UPY6 502 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 ACOT9Q9Y305 439 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 ALPK2Q86TB3 2170 aa7.46□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A1W2PPM1 405 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 K7EM74 188 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PLOD2O00469 737 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PPP6CO00743 305 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 DNAJB6O75190 326 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 AP2A2O94973 939 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CELA2AP08217 269 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ANXA5P08758 320 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 HOXC4P09017 264 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF182P17025 639 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CDH2P19022 906 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ACADLP28330 430 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CCR10P46092 362 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ALDH9A1P49189 494 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PGDP52209 483 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 HNRNPFP52597 415 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 IFITM2Q01629 132 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ADRM1Q16186 407 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 C6orf52Q5T4I8 152 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CAPN13Q6MZZ7 669 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 FKBP9P1Q75LS8 142 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR5M3Q8NGP4 307 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR51B5Q9H339 312 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SLCO1B3Q9NPD5 702 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 KLHL1Q9NR64 748 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SNX15Q9NRS6 342 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 C1GALT1Q9NS00 363 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 WHRNQ9P202 907 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PTGFRNQ9P2B2 879 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 POMT2Q9UKY4 750 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 MED16Q9Y2X0 877 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF407Q9C0G0 2248 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 MBP02144 154 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 TNNI3P19429 210 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 M6PRP20645 277 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 EFNA1P20827 205 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 RFC3P40938 356 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GMFBP60983 142 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GALK2Q01415 458 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR4D1Q15615 310 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 NKAIN1Q4KMZ8 207 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM45BPQ6NSW5 357 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 LRIG3Q6UXM1 1119 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR8H1Q8NGG4 311 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM45AQ8TCE6 357 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 RASSF5Q8WWW0 418 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 KCNJ9Q92806 393 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 NSUN5Q96P11 429 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 NAT9Q9BTE0 207 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SYTL2Q9HCH5 934 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PLSCR3Q9NRY6 295 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PLA2G3Q9NZ20 509 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF225Q9UK10 706 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms