RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZNF628Q5EBL2 1059 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 SLC25A25Q6KCM7 469 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 FAM111BQ6SJ93 734 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 CYP4Z2PQ8N1L4 340 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 FNDC5Q8NAU1 212 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 ADCY4Q8NFM4 1077 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 ASB15Q8WXK1 588 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 ERP27Q96DN0 273 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 BBS4Q96RK4 519 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 REEP4Q9H6H4 257 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 ASF1BQ9NVP2 202 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 PNPOQ9NVS9 261 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 NTNG1Q9Y2I2 539 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 GCN1Q92616 2671 aaKnown RBP20.11■□□□□ 0.81
CLN3-207ENST00000395653 SP1P08047 785 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 PTGER1P34995 402 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 SOX18P35713 384 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 SOX3P41225 446 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 OCRLQ01968 901 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 MAD2L1Q13257 205 aaPredicted RBP20.1■□□□□ 0.81
CLN3-207ENST00000395653 LTB4RQ15722 352 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 PRSS53Q2L4Q9 553 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 PIGGQ5H8A4 983 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 FAM9CQ8IZT9 166 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 OR9A2Q8NGT5 310 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 SLC22A8Q8TCC7 542 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 TMEM125Q96AQ2 219 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 MTERF3Q96E29 417 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 GAL3ST4Q96RP7 486 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 ACBD3Q9H3P7 528 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 AGPAT4Q9NRZ5 378 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 MAP10Q9P2G4 905 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 BAIAP2L1Q9UHR4 511 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 CFL2Q9Y281 166 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 C2orf92A0A1B0GVN3 265 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 A8MVJ9 347 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 RASAL1O95294 804 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 CBX7O95931 251 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 PRPS2P11908 318 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 NTSP30990 170 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 PDE7AQ13946 482 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 IGFBP7Q16270 282 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 IL23RQ5VWK5 629 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 OPN5Q6U736 354 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 FAM180AQ6UWF9 173 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 LRRC34Q8IZ02 419 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 SLC15A4Q8N697 577 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 ZNF441Q8N8Z8 693 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 CLHC1Q8NHS4 586 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 GFM2Q969S9 779 aaKnown RBP20.1■□□□□ 0.81
CLN3-207ENST00000395653 TP53INP1Q96A56 240 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 TAAR6Q96RI8 345 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 C1orf50Q9BV19 199 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 HES7Q9BYE0 225 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 KLHL1Q9NR64 748 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 HPF1Q9NWY4 346 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 ASIC5Q9NY37 505 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 ERVK-11Q9UQG0 969 aa20.1■□□□□ 0.81
CLN3-207ENST00000395653 NME2P1O60361 137 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 ZNF354AO60765 605 aaPredicted RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 BCAS2O75934 225 aaPredicted RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 SLITRK5O94991 958 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 OR6B1O95007 311 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 LRATO95237 230 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 NADKO95544 446 aaPredicted RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 NME2P22392 152 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 PPP2R2AP63151 447 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 MRPS35P82673 323 aaKnown RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 EMX2Q04743 252 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 TRMT12Q53H54 448 aaKnown RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 HLA-DQA1Q5Y7H0 255 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 R3HCC1LQ7Z5L2 792 aaKnown RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 ATCAYQ86WG3 371 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 LIX1Q8N485 282 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 BCORP1Q8N888 145 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 C17orf47Q8NEP4 570 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 C16orf52Q8NHV5 167 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 GRHL3Q8TE85 626 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 ZNF75CPQ92670 426 aaPredicted RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 PPCDCQ96CD2 204 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 PPP1R36Q96LQ0 422 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 NUF2Q9BZD4 464 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 AKTIPQ9H8T0 292 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 MEAF6Q9HAF1 191 aa20.09■□□□□ 0.81
CLN3-207ENST00000395653 EIF3LQ9Y262 564 aaKnown RBP20.09■□□□□ 0.81
CLN3-207ENST00000395653 AKAP10O43572 662 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 WISP1O95388 367 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 PCSK2P16519 638 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 DDX5P17844 614 aaKnown RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 HPCAL1P37235 193 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 RPL3P39023 403 aaKnown RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 NCBP2P52298 156 aaKnown RBP eCLIP20.08■□□□□ 0.8
CLN3-207ENST00000395653 PTGR1Q14914 329 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 EXOSC7Q15024 291 aaKnown RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 IL20RBQ6UXL0 311 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 GALNTL5Q7Z4T8 443 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 DND1Q8IYX4 353 aaKnown RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 GALNT11Q8NCW6 608 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 DNAJB8Q8NHS0 232 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 FAR1Q8WVX9 515 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms