RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 FGF11Q92914 225 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 CHFRQ96EP1 664 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 LRIG1Q96JA1 1093 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 KATNB1Q9BVA0 655 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SEC14L3Q9UDX4 400 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SLC9A8Q9Y2E8 581 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SF3B6Q9Y3B4 125 aaKnown RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ANKDD1BA6NHY2 528 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 SAP18O00422 153 aaKnown RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 SLC2A2P11168 524 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 ELNP15502 786 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 TIMP2P16035 220 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 ALAS2P22557 587 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 XPAP23025 273 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 ETV5P41161 510 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 ETV1P50549 477 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 MANFP55145 182 aaKnown RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 TAP2Q03519 686 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 GINS1Q14691 196 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 MLC1Q15049 377 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 RPS26P11Q5JNZ5 115 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 C1orf94Q6P1W5 598 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 MZT2AQ6P582 158 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 LCTLQ6UWM7 567 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 TMIGD1Q6UXZ0 262 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 MRGPREQ86SM8 312 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 UBASH3BQ8TF42 649 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 LRR1Q96L50 414 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 FYTTD1Q96QD9 318 aaKnown RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 FNDC11Q9BVV2 318 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 GTPBP2Q9BX10 602 aaKnown RBP15.42■□□□□ 0.06
SHMT2-231ENST00000557433 P2RX2Q9UBL9 471 aa15.42■□□□□ 0.06
SHMT2-231ENST00000557433 LINC00854A0A1B0GVQ3 168 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 LEFTY2O00292 366 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SEMA7AO75326 666 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SLC43A1O75387 559 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TNNI3P19429 210 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 GALP22466 123 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PDHA2P29803 388 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 IFNGR2P38484 337 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CYP4F8P98187 520 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 MINDY4Q4G0A6 757 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SNAP47Q5SQN1 464 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TNFAIP8L2Q6P589 184 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 C6orf120Q7Z4R8 191 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CAMKK1Q8N5S9 505 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TBC1D19Q8N5T2 526 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SMPDL3AQ92484 453 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 FOXJ1Q92949 421 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 C1GALT1C1Q96EU7 318 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 ZBED6CLQ96FA7 236 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 MED30Q96HR3 178 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TMEM121BQ9BXQ6 578 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 RHBGQ9H310 441 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PPP1R3EQ9H7J1 279 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PLSCR3Q9NRY6 295 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 ACSS1Q9NUB1 689 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 A4GNTQ9UNA3 340 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 OR6C70A6NIJ9 312 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SGK494L7N484 410 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 ORC5O43913 435 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 IGFBP1P08833 259 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PPP2R1BP30154 601 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TM4SF4P48230 202 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 ANXA11P50995 505 aaKnown RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 MAPK12P53778 367 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 GAS1P54826 345 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CLDN20P56880 219 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CD83Q01151 205 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SF3A2Q15428 464 aaKnown RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TATDN3Q17R31 274 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 SPDYE7PQ495Y7 208 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CRTC2Q53ET0 693 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PODNL1Q6PEZ8 512 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 PAQR6Q6TCH4 344 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 CREB3L2Q70SY1 520 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 GAREM2Q75VX8 874 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 GJD3Q8N144 294 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 LILRA3Q8N6C8 439 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-231ENST00000557433 AP2M1Q96CW1 435 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 TAS2R7Q9NYW3 318 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 BOLA1Q9Y3E2 137 aa15.41■□□□□ 0.06
SHMT2-231ENST00000557433 A0A0B4J293 547 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 C17orf113A0A1B0GUU1 675 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ANHXE9PGG2 379 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 HMGN4O00479 90 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 CHST10O43529 356 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF780AO75290 641 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 CLEC2LP0C7M8 214 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 TGM4P49221 684 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 PCBP4P57723 403 aaKnown RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ACSM1Q08AH1 577 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 RIPPLY1Q0D2K3 151 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 EFR3AQ14156 821 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 GNA13Q14344 377 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 FAM83HQ6ZRV2 1179 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 PRICKLE2Q7Z3G6 844 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 Q8N402 240 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms