RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 LAMB4A4D0S4 1761 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 CD2BP2O95400 341 aaKnown RBP10.61□□□□□ -0.71
TRIM55-204ENST00000353317 MRE11P49959 708 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 VPS72Q15906 364 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 FAM182BQ5T319 152 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 BARGINQ6ZT62 677 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.61□□□□□ -0.71
TRIM55-204ENST00000353317 KCNQ2O43526 872 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 SYTL4Q96C24 671 aaPredicted RBP10.61□□□□□ -0.71
TRIM55-204ENST00000353317 USP21Q9UK80 565 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 MAP3K2Q9Y2U5 619 aa10.61□□□□□ -0.71
TRIM55-204ENST00000353317 NBPF7P0C2Y1 421 aaPredicted RBP10.6□□□□□ -0.71
TRIM55-204ENST00000353317 CCT4P50991 539 aaKnown RBP10.6□□□□□ -0.71
TRIM55-204ENST00000353317 CWF19L2Q2TBE0 894 aaKnown RBP10.6□□□□□ -0.71
TRIM55-204ENST00000353317 CEP85Q6P2H3 762 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 COPS6Q7L5N1 327 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 ILDR1Q86SU0 546 aaPredicted RBP10.6□□□□□ -0.71
TRIM55-204ENST00000353317 XAGE3Q8WTP9 111 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 DNAAF4Q8WXU2 420 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 GCC1Q96CN9 775 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 GRPEL1Q9HAV7 217 aa10.6□□□□□ -0.71
TRIM55-204ENST00000353317 TBC1D9Q6ZT07 1266 aa10.59□□□□□ -0.71
TRIM55-204ENST00000353317 HYPKQ9NX55 129 aa10.59□□□□□ -0.71
TRIM55-204ENST00000353317 RAB3GAP1Q15042 981 aa10.59□□□□□ -0.71
TRIM55-204ENST00000353317 KSR2Q6VAB6 950 aa10.59□□□□□ -0.71
TRIM55-204ENST00000353317 DNAJC10Q8IXB1 793 aa10.59□□□□□ -0.71
TRIM55-204ENST00000353317 IGKV5-2P06315 115 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 ANKRD44Q8N8A2 993 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 RBM42Q9BTD8 480 aaKnown RBP10.58□□□□□ -0.72
TRIM55-204ENST00000353317 CIZ1Q9ULV3 898 aaPredicted RBP10.58□□□□□ -0.72
TRIM55-204ENST00000353317 AFF2P51816 1311 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 PXDNLA1KZ92 1463 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 PNMA6EA0A0J9YXQ4 647 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 CLCN1P35523 988 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 TTLL7Q6ZT98 887 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 CDCA7Q9BWT1 371 aaPredicted RBP10.58□□□□□ -0.72
TRIM55-204ENST00000353317 FOXD4L1Q9NU39 408 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 ARFGEF2Q9Y6D5 1785 aa10.58□□□□□ -0.72
TRIM55-204ENST00000353317 SRCIN1Q9C0H9 1055 aa10.57□□□□□ -0.72
TRIM55-204ENST00000353317 LRRFIP2Q9Y608 721 aaKnown RBP10.57□□□□□ -0.72
TRIM55-204ENST00000353317 GAS2L3Q86XJ1 694 aa10.57□□□□□ -0.72
TRIM55-204ENST00000353317 GBP4Q96PP9 640 aa10.57□□□□□ -0.72
TRIM55-204ENST00000353317 MYH14Q7Z406 1995 aaKnown RBP10.57□□□□□ -0.72
TRIM55-204ENST00000353317 K7ELQ4 463 aaPredicted RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 JARID2Q92833 1246 aaPredicted RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 KAZALD1Q96I82 304 aa10.56□□□□□ -0.72
TRIM55-204ENST00000353317 CHMP4BQ9H444 224 aaKnown RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 ISY1Q9ULR0 285 aaKnown RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 TJP1Q07157 1748 aa10.56□□□□□ -0.72
TRIM55-204ENST00000353317 A0A0G2JS52 829 aa10.56□□□□□ -0.72
TRIM55-204ENST00000353317 HSP90AA1P07900 732 aaKnown RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 MEX3CQ5U5Q3 659 aaKnown RBP10.56□□□□□ -0.72
TRIM55-204ENST00000353317 DCTPP1Q9H773 170 aa10.56□□□□□ -0.72
TRIM55-204ENST00000353317 THSD7AQ9UPZ6 1657 aa10.56□□□□□ -0.72
TRIM55-204ENST00000353317 ANKRD13DQ6ZTN6 518 aa10.55□□□□□ -0.72
TRIM55-204ENST00000353317 C16orf71Q8IYS4 520 aaPredicted RBP10.55□□□□□ -0.72
TRIM55-204ENST00000353317 GJD4Q96KN9 370 aaPredicted RBP10.55□□□□□ -0.72
TRIM55-204ENST00000353317 NUP188Q5SRE5 1749 aa10.55□□□□□ -0.72
TRIM55-204ENST00000353317 GNAI2P04899 355 aa10.55□□□□□ -0.72
TRIM55-204ENST00000353317 GSPT1P15170 499 aaKnown RBP10.55□□□□□ -0.72
TRIM55-204ENST00000353317 KCNQ4P56696 695 aa10.55□□□□□ -0.72
TRIM55-204ENST00000353317 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
TRIM55-204ENST00000353317 RPAP2Q8IXW5 612 aaPredicted RBP10.55□□□□□ -0.72
TRIM55-204ENST00000353317 AFDNP55196 1824 aaKnown RBP10.55□□□□□ -0.72
TRIM55-204ENST00000353317 ATP5J2-PTCD1G3V325 749 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 SMARCA5O60264 1052 aaPredicted RBP10.54□□□□□ -0.72
TRIM55-204ENST00000353317 UBE2Q2Q8WVN8 375 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 MYD88Q99836 296 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 APBB1O00213 710 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 CYP19A1P11511 503 aaPredicted RBP10.54□□□□□ -0.72
TRIM55-204ENST00000353317 OTUD7AQ8TE49 926 aaPredicted RBP10.54□□□□□ -0.72
TRIM55-204ENST00000353317 ERBB4Q15303 1308 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 NEURL1BA8MQ27 555 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 GNAI3P08754 354 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 UBTFL1P0CB47 393 aaPredicted RBP10.54□□□□□ -0.72
TRIM55-204ENST00000353317 SSFA2P28290 1259 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 ATP8B2P98198 1209 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 LINS1Q8NG48 757 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 METTL22Q9BUU2 404 aaPredicted RBP10.54□□□□□ -0.72
TRIM55-204ENST00000353317 CHMP4AQ9BY43 222 aa10.54□□□□□ -0.72
TRIM55-204ENST00000353317 CDC45O75419 566 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ITPK1Q13572 414 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 SKOR2Q2VWA4 1001 aaPredicted RBP10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ZBTB3Q9H5J0 574 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 EXOC6BQ9Y2D4 811 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ATRNO75882 1429 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 SBF2Q86WG5 1849 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ESPNB1AK53 854 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 EPHA10Q5JZY3 1008 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 PLEKHM2Q8IWE5 1019 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 VSIG10Q8N0Z9 540 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 NAP1L5Q96NT1 182 aaPredicted RBP10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ZBTB1Q9Y2K1 713 aa10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ZNF330Q9Y3S2 320 aaPredicted RBP10.53□□□□□ -0.72
TRIM55-204ENST00000353317 ONECUT3O60422 494 aaPredicted RBP10.52□□□□□ -0.73
TRIM55-204ENST00000353317 PPP1R42Q7Z4L9 355 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 SUCLG2Q96I99 432 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 BRWD3Q6RI45 1802 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 ALDH1L1O75891 902 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 DDX58O95786 925 aaKnown RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms