RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 CCDC125Q86Z20 511 aa25.22■■□□□ 1.63
SNX3-201ENST00000230085 SIPA1L3O60292 1781 aaPredicted RBP25.22■■□□□ 1.63
SNX3-201ENST00000230085 CD2BP2O95400 341 aaKnown RBP25.21■■□□□ 1.63
SNX3-201ENST00000230085 TAF7Q15545 349 aaPredicted RBP25.21■■□□□ 1.63
SNX3-201ENST00000230085 ATG3Q9NT62 314 aa25.21■■□□□ 1.63
SNX3-201ENST00000230085 MIS18AQ9NYP9 233 aa25.21■■□□□ 1.63
SNX3-201ENST00000230085 BTBD11A6QL63 1104 aa25.2■■□□□ 1.62
SNX3-201ENST00000230085 DEFB132Q7Z7B7 95 aa25.2■■□□□ 1.62
SNX3-201ENST00000230085 DCTPP1Q9H773 170 aa25.2■■□□□ 1.62
SNX3-201ENST00000230085 BAG4O95429 457 aaKnown RBP25.19■■□□□ 1.62
SNX3-201ENST00000230085 CWC22Q9HCG8 908 aaKnown RBP25.19■■□□□ 1.62
SNX3-201ENST00000230085 EN1Q05925 392 aaPredicted RBP25.18■■□□□ 1.62
SNX3-201ENST00000230085 PLSCR1O15162 318 aa25.17■■□□□ 1.62
SNX3-201ENST00000230085 KCNQ3O43525 872 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 ZSCAN30Q86W11 494 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 PLEKHM2Q8IWE5 1019 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 PALLDQ8WX93 1383 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 BAG6P46379 1132 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 INTS3Q68E01 1043 aaKnown RBP25.16■■□□□ 1.62
SNX3-201ENST00000230085 ZNF790Q6PG37 636 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 ATP10DQ9P241 1426 aa25.16■■□□□ 1.62
SNX3-201ENST00000230085 PTCD1O75127 700 aaKnown RBP25.15■■□□□ 1.62
SNX3-201ENST00000230085 SSFA2P28290 1259 aa25.15■■□□□ 1.62
SNX3-201ENST00000230085 NASPP49321 788 aaPredicted RBP25.15■■□□□ 1.62
SNX3-201ENST00000230085 HSP90AA2PQ14568 343 aaPredicted RBP25.15■■□□□ 1.62
SNX3-201ENST00000230085 TTC22Q5TAA0 569 aa25.15■■□□□ 1.62
SNX3-201ENST00000230085 SMARCC1Q92922 1105 aaPredicted RBP25.15■■□□□ 1.62
SNX3-201ENST00000230085 GSPT1P15170 499 aaKnown RBP25.14■■□□□ 1.62
SNX3-201ENST00000230085 ARXQ96QS3 562 aa25.14■■□□□ 1.62
SNX3-201ENST00000230085 EZH2Q15910 746 aaKnown RBP25.13■■□□□ 1.61
SNX3-201ENST00000230085 PROM2Q8N271 834 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 CAMKK2Q96RR4 588 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 KCNQ4P56696 695 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 TTC5Q8N0Z6 440 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
SNX3-201ENST00000230085 USP26Q9BXU7 913 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 MBIPQ9NS73 344 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 TSPYL4Q9UJ04 414 aa25.13■■□□□ 1.61
SNX3-201ENST00000230085 CHL1O00533 1208 aa25.12■■□□□ 1.61
SNX3-201ENST00000230085 ANP32BQ92688 251 aaKnown RBP25.12■■□□□ 1.61
SNX3-201ENST00000230085 PAPPAQ13219 1627 aa25.11■■□□□ 1.61
SNX3-201ENST00000230085 RPAP2Q8IXW5 612 aaPredicted RBP25.11■■□□□ 1.61
SNX3-201ENST00000230085 PDLIM2Q96JY6 352 aa25.11■■□□□ 1.61
SNX3-201ENST00000230085 LOC102724428A0A0B4J2F2 783 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 OFD1O75665 1012 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 SIK1P57059 783 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 TXNRD1Q16881 649 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 TWISTNBQ3B726 338 aaPredicted RBP25.1■■□□□ 1.61
SNX3-201ENST00000230085 ANKRD44Q8N8A2 993 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 TUBGCP6Q96RT7 1819 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 TSPYL6Q8N831 410 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 ZNF496Q96IT1 587 aaPredicted RBP25.1■■□□□ 1.61
SNX3-201ENST00000230085 SLC4A9Q96Q91 983 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 DDX49Q9Y6V7 483 aaKnown RBP25.1■■□□□ 1.61
SNX3-201ENST00000230085 LY75O60449 1722 aa25.1■■□□□ 1.61
SNX3-201ENST00000230085 LRRC4BQ9NT99 713 aa25.09■■□□□ 1.61
SNX3-201ENST00000230085 BABAM1Q9NWV8 329 aa25.09■■□□□ 1.61
SNX3-201ENST00000230085 SOCS7O14512 581 aa25.08■■□□□ 1.61
SNX3-201ENST00000230085 KDM3BQ7LBC6 1761 aa25.08■■□□□ 1.61
SNX3-201ENST00000230085 KCPQ6ZWJ8 1503 aa25.08■■□□□ 1.61
SNX3-201ENST00000230085 LMBRD1Q9NUN5 540 aa25.08■■□□□ 1.6
SNX3-201ENST00000230085 CCNL1Q9UK58 526 aaPredicted RBP25.08■■□□□ 1.6
SNX3-201ENST00000230085 UBR2Q8IWV8 1755 aa25.07■■□□□ 1.6
SNX3-201ENST00000230085 ATP6V1AP38606 617 aa25.07■■□□□ 1.6
SNX3-201ENST00000230085 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.06■■□□□ 1.6
SNX3-201ENST00000230085 RGPD3A6NKT7 1758 aaPredicted RBP25.06■■□□□ 1.6
SNX3-201ENST00000230085 RGPD4Q7Z3J3 1758 aa25.06■■□□□ 1.6
SNX3-201ENST00000230085 MCM5P33992 734 aa25.05■■□□□ 1.6
SNX3-201ENST00000230085 EIF4A1P60842 406 aaKnown RBP25.05■■□□□ 1.6
SNX3-201ENST00000230085 FMNL2Q96PY5 1086 aa25.05■■□□□ 1.6
SNX3-201ENST00000230085 AK9Q5TCS8 1911 aa25.05■■□□□ 1.6
SNX3-201ENST00000230085 ZNF500O60304 480 aaPredicted RBP25.05■■□□□ 1.6
SNX3-201ENST00000230085 SLC27A3Q5K4L6 730 aa25.05■■□□□ 1.6
SNX3-201ENST00000230085 C1orf115Q9H7X2 142 aa25.05■■□□□ 1.6
SNX3-201ENST00000230085 ITPK1Q13572 414 aa25.04■■□□□ 1.6
SNX3-201ENST00000230085 PTPRCP08575 1304 aa25.04■■□□□ 1.6
SNX3-201ENST00000230085 KRT24Q2M2I5 525 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 CASC1Q6TDU7 716 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 IL17RAQ96F46 866 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 OSBPL3Q9H4L5 887 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 HEG1Q9ULI3 1381 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 PRAMEF22A3QJZ6 481 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 ST18O60284 1047 aa25.03■■□□□ 1.6
SNX3-201ENST00000230085 REC8O95072 547 aa25.02■■□□□ 1.6
SNX3-201ENST00000230085 ZSCAN23Q3MJ62 389 aa25.02■■□□□ 1.6
SNX3-201ENST00000230085 C8orf58Q8NAV2 365 aa25.02■■□□□ 1.6
SNX3-201ENST00000230085 PDCL3Q9H2J4 239 aa25.02■■□□□ 1.6
SNX3-201ENST00000230085 NOL7Q9UMY1 257 aaKnown RBP25.02■■□□□ 1.6
SNX3-201ENST00000230085 VSIG10Q8N0Z9 540 aa25.01■■□□□ 1.59
SNX3-201ENST00000230085 DNAJC10Q8IXB1 793 aa25■■□□□ 1.59
SNX3-201ENST00000230085 N4BP2Q86UW6 1770 aaPredicted RBP25■■□□□ 1.59
SNX3-201ENST00000230085 GIGYF1O75420 1035 aaPredicted RBP24.99■■□□□ 1.59
SNX3-201ENST00000230085 SNRPA1P09661 255 aaKnown RBP24.99■■□□□ 1.59
SNX3-201ENST00000230085 LINC00116Q8NCU8 138 aa24.99■■□□□ 1.59
SNX3-201ENST00000230085 RREB1Q92766 1687 aa24.99■■□□□ 1.59
SNX3-201ENST00000230085 MCM2P49736 904 aa24.98■■□□□ 1.59
SNX3-201ENST00000230085 CEP85Q6P2H3 762 aa24.98■■□□□ 1.59
SNX3-201ENST00000230085 USP16Q9Y5T5 823 aa24.98■■□□□ 1.59
SNX3-201ENST00000230085 TAF1LQ8IZX4 1826 aa24.98■■□□□ 1.59
SNX3-201ENST00000230085 ZNF831Q5JPB2 1677 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms