RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	SH3BGRL2	Q9UJC5	107 aa		6.41	□□□□□ -1.38
SF3B3-209	ENST00000567635	SNX6	Q9UNH7	406 aa		6.41	□□□□□ -1.38
SF3B3-209	ENST00000567635		V9GYY5	206 aa	Predicted RBP	6.41	□□□□□ -1.38
SF3B3-209	ENST00000567635	ABCA12	Q86UK0	2595 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635		A0A1B0GTH9	108 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635		A0A1B0GTL3	188 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	GOLGA8R	I6L899	631 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	HRK	O00198	91 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PRRG2	O14669	202 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DLX3	O60479	287 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	GUCY1B2	O75343	617 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PRKRA	O75569	313 aa	Known RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PDE9A	O76083	593 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SUPT7L	O94864	414 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR4F21	O95013	312 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	AIFM1	O95831	613 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	KRT6A	P02538	564 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	KRT6B	P04259	564 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	IGKV3-11	P04433	115 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635		P04436	131 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	GSTA1	P08263	222 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RPS17	P08708	135 aa	Known RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	H2AFX	P16104	143 aa	Predicted RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	TSPAN8	P19075	237 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ATP5F1	P24539	256 aa	Predicted RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PTGER1	P34995	402 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RFC3	P40938	356 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	KRT6C	P48668	564 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	XK	P51811	444 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SMS	P52788	366 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	MAPK12	P53778	367 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PRKAA2	P54646	552 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	GPR85	P60893	370 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PPIA	P62937	165 aa	Known RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ERVK-8	P63133	956 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	CLC	Q05315	142 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ASPH	Q12797	758 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ART3	Q13508	389 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SPRED3	Q2MJR0	410 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF791	Q3KP31	576 aa	Predicted RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	UNC50	Q53HI1	259 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF678	Q5SXM1	525 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	NDUFAF5	Q5TEU4	345 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SLC22A10	Q63ZE4	541 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF787	Q6DD87	383 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR52E8	Q6IFG1	317 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	LETMD1	Q6P1Q0	360 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RPTN	Q6XPR3	784 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RNF111	Q6ZNA4	994 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DGAT2L6	Q6ZPD8	337 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RGS9BP	Q6ZS82	235 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SLC29A4	Q7RTT9	530 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	MRGPRG	Q86SM5	289 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DOLPP1	Q86YN1	238 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SLC22A9	Q8IVM8	553 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	METTL4	Q8N3J2	472 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF808	Q8N4W9	903 aa	Predicted RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	GOLM1	Q8NBJ4	401 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR2M7	Q8NG81	312 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	NUBPL	Q8TB37	319 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DOK4	Q8TEW6	326 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ITLN2	Q8WWU7	325 aa	Predicted RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SELENOM	Q8WWX9	145 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	UCN3	Q969E3	161 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	CCDC120	Q96HB5	630 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	FAM173A	Q9BQD7	235 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	CNPPD1	Q9BV87	410 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DEFB127	Q9H1M4	99 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	BRF2	Q9HAW0	419 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	FARSB	Q9NSD9	589 aa	Known RBP	6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SACM1L	Q9NTJ5	587 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	DEPP	Q9NTK1	212 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	VPS29	Q9UBQ0	182 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	TBK1	Q9UHD2	729 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	TRPS1	Q9UHF7	1281 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	TINAG	Q9UJW2	476 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF225	Q9UK10	706 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	RAB21	Q9UL25	225 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	PSME2	Q9UL46	239 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SLC12A4	Q9UP95	1085 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	ERVK-19	Q9WJR5	959 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	MEMO1	Q9Y316	297 aa		6.4	□□□□□ -1.38
SF3B3-209	ENST00000567635	SPEN	Q96T58	3664 aa	Known RBP	6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635		A0A1W2PPM1	405 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	PINLYP	A6NC86	204 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	OR6C76	A6NM76	312 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	PRSS44	E7EML9	344 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635		E9PLN8	166 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635		G3V3Y1	287 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	ACOT7	O00154	380 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	MANBA	O00462	879 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	ZNHIT1	O43257	154 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	HS6ST1	O60243	411 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	CDC40	O60508	579 aa	Known RBP eCLIP	6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	ZNF354A	O60765	605 aa	Predicted RBP	6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	ULK1	O75385	1050 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	HSD3B1	P14060	373 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	CPM	P14384	443 aa		6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	POR	P16435	677 aa	Predicted RBP	6.39	□□□□□ -1.39
SF3B3-209	ENST00000567635	AGA	P20933	346 aa		6.39	□□□□□ -1.39

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms