RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CCM2LQ9NUG4 571 aaPredicted RBP19.96■□□□□ 0.79
VPS28-212ENST00000530836 SNX8Q9Y5X2 465 aa19.96■□□□□ 0.79
VPS28-212ENST00000530836 UNC13CQ8NB66 2214 aa19.96■□□□□ 0.79
VPS28-212ENST00000530836 IGHV5-10-1A0A0J9YXX1 117 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 RNF103-CHMP3A0A140T963 221 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 NTRK1P04629 796 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 NCK1P16333 377 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 CCKBRP32239 447 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 GPC1P35052 558 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 AVPR1BP47901 424 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 SPDYE7PQ495Y7 208 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 YOD1Q5VVQ6 348 aaPredicted RBP19.95■□□□□ 0.78
VPS28-212ENST00000530836 SAXO2Q658L1 398 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 ANGPTL8Q6UXH0 198 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 ZNF551Q7Z340 670 aaPredicted RBP19.95■□□□□ 0.78
VPS28-212ENST00000530836 CA13Q8N1Q1 262 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 FIG4Q92562 907 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 UCN3Q969E3 161 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 MVB12AQ96EY5 273 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 CNRIP1Q96F85 164 aaPredicted RBP19.95■□□□□ 0.78
VPS28-212ENST00000530836 CHST8Q9H2A9 424 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 USP22Q9UPT9 525 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 KNTC1P50748 2209 aa19.95■□□□□ 0.78
VPS28-212ENST00000530836 H0YIG0 161 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 PRKRAO75569 313 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 PPP2R1BP30154 601 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 CRATP43155 626 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SEPHS1P49903 392 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SNRPNP63162 240 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 TLDC1Q6P9B6 456 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 PRSS41Q7RTY9 318 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 MARCH9Q86YJ5 346 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 PQLC1Q8N2U9 271 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SFXN5Q8TD22 340 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 ZNF681Q96N22 645 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SCNM1Q9BWG6 230 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 EPS8L2Q9H6S3 715 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SIRT3Q9NTG7 399 aaPredicted RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 THUMPD1Q9NXG2 353 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 SERTAD3Q9UJW9 196 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 MRPS33Q9Y291 106 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 TCRBV5S2A0A599 114 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SGK494L7N484 410 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 CYR61O00622 381 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 CREG1O75629 220 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 OR2B3O76000 313 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 PTDSS1P48651 473 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 CCT3P49368 545 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 MVDP53602 400 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 TXNL4AP83876 142 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 TRA2AQ13595 282 aaKnown RBP eCLIP19.94■□□□□ 0.78
VPS28-212ENST00000530836 SNAP47Q5SQN1 464 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.94■□□□□ 0.78
VPS28-212ENST00000530836 FAM180BQ6P0A1 224 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 SLC30A8Q8IWU4 369 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 ZZZ3Q8IYH5 903 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 GPR135Q8IZ08 494 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 EID3Q8N140 333 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 LRRC25Q8N386 305 aaPredicted RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 C11orf65Q8NCR3 313 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 OR9A4Q8NGU2 314 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 PNPT1Q8TCS8 783 aaKnown RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 CANT1Q8WVQ1 401 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 FAM162AQ96A26 154 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 TMEM38AQ9H6F2 299 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 ANAPC2Q9UJX6 822 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 KLK13Q9UKR3 277 aa19.94■□□□□ 0.78
VPS28-212ENST00000530836 FAF1Q9UNN5 650 aaPredicted RBP19.94■□□□□ 0.78
VPS28-212ENST00000530836 ZNF860A6NHJ4 632 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 HNRNPRO43390 633 aaKnown RBP19.93■□□□□ 0.78
VPS28-212ENST00000530836 FOXS1O43638 330 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 SLITRK5O94991 958 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 CTSBP07858 339 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 BMP2P12643 396 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 RNH1P13489 461 aaKnown RBP19.93■□□□□ 0.78
VPS28-212ENST00000530836 ANXA11P50995 505 aaKnown RBP19.93■□□□□ 0.78
VPS28-212ENST00000530836 SESN3P58005 492 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 GCNT6Q5T4J0 391 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 PHF19Q5T6S3 580 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 LRRC74BQ6ZQY2 392 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 CCDC116Q8IYX3 515 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 C10orf111Q8N326 155 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 SUN3Q8TAQ9 357 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 NCLNQ969V3 563 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 CCDC74BQ96LY2 380 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 UGT2B28Q9BY64 529 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 STRADBQ9C0K7 418 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 VCX3BQ9H321 246 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 OLAHQ9NV23 265 aa19.93■□□□□ 0.78
VPS28-212ENST00000530836 A0A0A6YYC8 382 aaPredicted RBP19.92■□□□□ 0.78
VPS28-212ENST00000530836 MED19A0JLT2 244 aaPredicted RBP19.92■□□□□ 0.78
VPS28-212ENST00000530836 TMEM150CB9EJG8 249 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 I3L1I5 382 aaPredicted RBP19.92■□□□□ 0.78
VPS28-212ENST00000530836 CHST10O43529 356 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 RDH16O75452 317 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 TNFRSF21O75509 655 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 FCGR1AP12314 374 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 SPINK2P20155 84 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 PCGF2P35227 344 aa19.92■□□□□ 0.78
VPS28-212ENST00000530836 SOX11P35716 441 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms