RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CASC4Q6P4E1 433 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SCIMPQ6UWF3 145 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 CYHR1Q6ZMK1 362 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 PRUNE1Q86TP1 453 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 CNTN4Q8IWV2 1026 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 CPNE9Q8IYJ1 553 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 DND1Q8IYX4 353 aaKnown RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 CNPY4Q8N129 248 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 C9orf106Q8NAJ2 232 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SPATA4Q8NEY3 305 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 OR4K1Q8NGD4 311 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SLC2A12Q8TD20 617 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 KCNJ9Q92806 393 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 ABTB1Q969K4 478 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 SPACA9Q96E40 222 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 ZC3HAV1LQ96H79 300 aaKnown RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 WFIKKN1Q96NZ8 548 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 GPR21Q99679 349 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 AIF1LQ9BQI0 150 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SGPP1Q9BX95 441 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 NPLQ9BXD5 320 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 TRIM54Q9BYV2 358 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 COPS7BQ9H9Q2 264 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 ARL15Q9NXU5 204 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 WHRNQ9P202 907 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 PDE10AQ9Y233 779 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 DHRS7Q9Y394 339 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 DYRK1BQ9Y463 629 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 A0A087X1B8 175 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 LRRC3CA6NJW4 275 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 DEFB108AA8MXU0 73 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 E7ESA3 106 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 H0Y3Z8 333 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ERI3O43414 337 aaKnown RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 CD5LO43866 347 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 CTNSO60931 367 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 SEC31AO94979 1220 aaKnown RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 LRATO95237 230 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 C1QAP02745 245 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 GSTA2P09210 222 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 FAM157CP0CG43 387 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 VPS41P49754 854 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ARL4CP56559 192 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 OCRLQ01968 901 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 FOXF2Q12947 444 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 GAB1Q13480 694 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 RUNX2Q13950 521 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 SERTAD2Q14140 314 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ZNF791Q3KP31 576 aaPredicted RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 TBCELQ5QJ74 424 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ANKRD22Q5VYY1 191 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 DUPD1Q68J44 220 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ZNF470Q6ECI4 717 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 VASNQ6EMK4 673 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 UGT3A1Q6NUS8 523 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 PACS2Q86VP3 889 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 GCNT2Q8N0V5 402 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 MYO1HQ8N1T3 1032 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 SLC15A4Q8N697 577 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ZNF321PQ8N8H1 164 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 GIMAP7Q8NHV1 300 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 PTPMT1Q8WUK0 201 aaPredicted RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 SLC5A11Q8WWX8 675 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 DIO2Q92813 273 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ZBED6CLQ96FA7 236 aaPredicted RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 TSNARE1Q96NA8 513 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 KRT12Q99456 494 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 ERP44Q9BS26 406 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 C19orf24Q9BVV8 132 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 BEX2Q9BXY8 128 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 REG4Q9BYZ8 158 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 RAB17Q9H0T7 212 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 TSPYL1Q9H0U9 437 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 NSMCE4AQ9NXX6 385 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 VTI1BQ9UEU0 232 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 TRMT6Q9UJA5 497 aaKnown RBP10.13□□□□□ -0.79
VPS53-207ENST00000570510 CDC42EP3Q9UKI2 254 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 PACSIN3Q9UKS6 424 aa10.13□□□□□ -0.79
VPS53-207ENST00000570510 TGFBR3LH3BV60 316 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 TP53I11O14683 189 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 ZNF354AO60765 605 aaPredicted RBP10.12□□□□□ -0.79
VPS53-207ENST00000570510 RCBTB2O95199 551 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 CRYGSP22914 178 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 HPDP32754 393 aaPredicted RBP10.12□□□□□ -0.79
VPS53-207ENST00000570510 SRYQ05066 204 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 KRTAP1-1Q07627 177 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 FAM27E3Q08E93 113 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 CALCOCO2Q13137 446 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 SP140Q13342 867 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 CTBP1Q13363 440 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 WHAMMP3Q1A5X7 153 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 STEAP4Q687X5 459 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 CENPUQ71F23 418 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 MNS1Q8NEH6 495 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 OR10G3Q8NGC4 313 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 ZPLD1Q8TCW7 415 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 ATL1Q8WXF7 558 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 GAL3ST3Q96A11 431 aa10.12□□□□□ -0.79
VPS53-207ENST00000570510 TRMT61AQ96FX7 289 aaKnown RBP10.12□□□□□ -0.79
VPS53-207ENST00000570510 WDYHV1Q96HA8 205 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms