RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 RHOP08100 348 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 LEXMQ3ZCV2 418 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PLAG1Q6DJT9 500 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CEACAM20Q6UY09 585 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SLC38A5Q8WUX1 472 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 LINC00615Q96LM1 132 aaPredicted RBP15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CDX2Q99626 313 aaPredicted RBP15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 NRTNQ99748 197 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 NLNQ9BYT8 704 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ROGDIQ9GZN7 287 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ABCG4Q9H172 646 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 MIEF1Q9NQG6 463 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ENOPH1Q9UHY7 261 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CAB39Q9Y376 341 aaPredicted RBP15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SNX8Q9Y5X2 465 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 TCF20Q9UGU0 1960 aaKnown RBP15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PLPP1O14494 284 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ARHGAP33O14559 1287 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 HAT1O14929 419 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 MPZL2O60487 215 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 B4GALT2O60909 372 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ETV6P41212 452 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SEC23BQ15437 767 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 MED22Q15528 200 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PRAMEF14Q5SWL7 426 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PRAMEF13Q5VWM6 474 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ARRDC3Q96B67 414 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 NEURL3Q96EH8 262 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 GUCD1Q96NT3 240 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 MIR1-1HGQ9H1L0 117 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 A4GALTQ9NPC4 353 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CLN6Q9NWW5 311 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PEX16Q9Y5Y5 336 aa15.28■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 DNAH14Q0VDD8 3507 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 C17orf113A0A1B0GUU1 675 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ANKRD34BA5PLL1 514 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PI15O43692 258 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ENTPD6O75354 484 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 GPX5O75715 221 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 MFN2O95140 757 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 IGFBP1P08833 259 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 PIPP12273 146 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 POU1F1P28069 291 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 S100A5P33763 92 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 TPTEP56180 551 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ARHGAP15Q53QZ3 475 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 TNFAIP8L2Q6P589 184 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SYCE2Q6PIF2 218 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 LCTLQ6UWM7 567 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 WDR53Q7Z5U6 358 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 C11orf96Q7Z7L8 435 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 C12orf40Q86WS4 652 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SLC44A2Q8IWA5 706 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 FAM46DQ8NEK8 389 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SMG7Q92540 1137 aaKnown RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 UBE2E3Q969T4 207 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 TM4SF18Q96CE8 201 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 NUS1Q96E22 293 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 SDHCQ99643 169 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 ZCCHC2Q9C0B9 1178 aaKnown RBP15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CLEC1BQ9P126 229 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 DOCK8Q8NF50 2099 aa15.27■□□□□ 0.04
MSH5-SAPCD1-208ENST00000498473 CCRL2O00421 344 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 RTCAO00442 366 aaKnown RBP15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 BCHEP06276 602 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DDCP20711 480 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MAGP20916 626 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 GPR1P46091 355 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MESP2Q0VG99 397 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TP53BP2Q13625 1128 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 RAET1GQ6H3X3 334 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 VASH1Q7L8A9 365 aaPredicted RBP15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CCDC190Q86UF4 302 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 HEATR4Q86WZ0 1026 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TAGAPQ8N103 731 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CLIP4Q8N3C7 705 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 OR2L2Q8NH16 312 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WDR36Q8NI36 951 aaKnown RBP15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMEM19Q96HH6 336 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TXNDC15Q96J42 360 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 LRRC3BQ96PB8 259 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 OPALINQ96PE5 141 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WFDC6Q9BQY6 131 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 OR52A5Q9H2C5 316 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DPEP2Q9H4A9 486 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PRDM6Q9NQX0 595 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NDOR1Q9UHB4 597 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 LSM2Q9Y333 95 aaKnown RBP15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PCDHGB6Q9Y5F9 930 aa15.27■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 KMOO15229 486 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PTTG1O95997 202 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ADAP00813 363 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 OSMP13725 252 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 BSGP35613 385 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 LTBRP36941 435 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DGKGP49619 791 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SNRPGP62308 76 aaKnown RBP15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DHCR24Q15392 516 aa15.26■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 KCNJ8Q15842 424 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms