RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 CCDC116Q8IYX3 515 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 RBM15BQ8NDT2 890 aaKnown RBP13.75□□□□□ -0.21
TNF-208ENST00000449264 STT3BQ8TCJ2 826 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 LRFN5Q96NI6 719 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 CHST8Q9H2A9 424 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 SOX17Q9H6I2 414 aaPredicted RBP13.75□□□□□ -0.21
TNF-208ENST00000449264 POLR1BQ9H9Y6 1135 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 PRDM9Q9NQV7 894 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 MAP10Q9P2G4 905 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 GPN3Q9UHW5 284 aaPredicted RBP13.75□□□□□ -0.21
TNF-208ENST00000449264 PCDHGA8Q9Y5G5 932 aa13.75□□□□□ -0.21
TNF-208ENST00000449264 BLACEA4D250 179 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 C9J4A7 227 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 TGFBR3LH3BV60 316 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 NVLO15381 856 aaKnown RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 ATP5HO75947 161 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 GPR75O95800 540 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 CPMP14384 443 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 CSNK2A2P19784 350 aaPredicted RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 IL10P22301 178 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 GPC1P35052 558 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 SOAT1P35610 550 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 NCALDP61601 193 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 HBA1P69905 142 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 GTDC1Q4AE62 458 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 C6orf15Q6UXA7 325 aaPredicted RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 LRRC25Q8N386 305 aaPredicted RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 DPP10Q8N608 796 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 NATD1Q8N6N6 113 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 ZFP28Q8NHY6 868 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 ANKRD9Q96BM1 317 aaPredicted RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 PTCHD1Q96NR3 888 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 CCDC115Q96NT0 180 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 AMDHD1Q96NU7 426 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 DPH2Q9BQC3 489 aaPredicted RBP13.74□□□□□ -0.21
TNF-208ENST00000449264 GLIPR2Q9H4G4 154 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 BTNL2Q9UIR0 455 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 MKL2Q9ULH7 1088 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 PCDHGB4Q9UN71 923 aa13.74□□□□□ -0.21
TNF-208ENST00000449264 MYO1GB0I1T2 1018 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 HNRNPCL1O60812 293 aaKnown RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 CTNSO60931 367 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 DLGAP3O95886 979 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 KRT16P08779 473 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 ZGLP1P0C6A0 271 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 RBMS1P29558 406 aaKnown RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 FRKP42685 505 aaPredicted RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 HSD17B7P56937 341 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 LTB4RQ15722 352 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 FAM198BQ6UWH4 519 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 OVCH1Q7RTY7 1134 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 YTHDF3Q7Z739 585 aaKnown RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 LAPTM4BQ86VI4 370 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SCUBE1Q8IWY4 988 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SAMD14Q8IZD0 417 aaPredicted RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 OR9A2Q8NGT5 310 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SUN3Q8TAQ9 357 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 TSLPQ969D9 159 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 ROPN1LQ96C74 230 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SLC7A6OSQ96CW6 309 aaPredicted RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 LRRC58Q96CX6 371 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 ZNF681Q96N22 645 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SLC6A13Q9NSD5 602 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 ACSS1Q9NUB1 689 aaPredicted RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 C14orf105Q9NVL8 296 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 GID8Q9NWU2 228 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.73□□□□□ -0.21
TNF-208ENST00000449264 MAN2B2Q9Y2E5 1009 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 SNX8Q9Y5X2 465 aa13.73□□□□□ -0.21
TNF-208ENST00000449264 IGLV3-12A0A075B6K2 115 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 A0A096LPI6 279 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 FXYD1O00168 92 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 GYG2O15488 501 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 OR10H2O60403 315 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 CNOT3O75175 753 aaKnown RBP13.72□□□□□ -0.21
TNF-208ENST00000449264 CCNYL3P0C7X3 344 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 PORP16435 677 aaPredicted RBP13.72□□□□□ -0.21
TNF-208ENST00000449264 SLC5A2P31639 672 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 MPIP34949 423 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 RASSF2P50749 326 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 CDK9P50750 372 aaKnown RBP13.72□□□□□ -0.21
TNF-208ENST00000449264 LRRC74AQ0VAA2 488 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 FOXC1Q12948 553 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 GAB1Q13480 694 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 NKG7Q16617 165 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 LACTB2Q53H82 288 aaPredicted RBP13.72□□□□□ -0.21
TNF-208ENST00000449264 DLEU7Q6UYE1 221 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 QSOX2Q6ZRP7 698 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 ZNF621Q6ZSS3 439 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 TIPARPQ7Z3E1 657 aaKnown RBP13.72□□□□□ -0.21
TNF-208ENST00000449264 SZRD1Q7Z422 152 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 TMEM151BQ8IW70 566 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 DEFB107AQ8IZN7 70 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 CLEC4FQ8N1N0 589 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 ADCY4Q8NFM4 1077 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 OR5AK3PQ8NH89 298 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 DOK4Q8TEW6 326 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 OR5P2Q8WZ92 322 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 FKBP10Q96AY3 582 aa13.72□□□□□ -0.21
TNF-208ENST00000449264 FAM122AQ96E09 287 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms