RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FADDQ13158 208 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 POLR2J2Q9GZM3 115 aaKnown RBP20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ABCB9Q9NP78 766 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 SLC35F4A4IF30 521 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 OR52A4PA6NMU1 304 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PDPK1O15530 556 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 OXSR1O95747 527 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 XKP51811 444 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 LASP1Q14847 261 aaKnown RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ZNF630Q2M218 657 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 TMEM53Q6P2H8 277 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 CAMKK1Q8N5S9 505 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 SYT14Q8NB59 555 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 SERHL2Q9H4I8 314 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 KLHL31Q9H511 634 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 FBXW2Q9UKT8 454 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 NTNG1Q9Y2I2 539 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 BOLA1Q9Y3E2 137 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ZNF106Q9H2Y7 1883 aaKnown RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ABHD14A-ACY1A0A1B0GW23 586 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PRAMEF27A3QJZ7 478 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 TBC1D3BA6NDS4 549 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 IGLON5A6NGN9 336 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 MED26O95402 600 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 KRT75O95678 551 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 EPHX1P07099 455 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ADRB3P13945 408 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 IRF3Q14653 427 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 BCL7AQ4VC05 210 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 NXNL2Q5VZ03 156 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 CASP12Q6UXS9 341 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 IQCHQ86VS3 1027 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 KBTBD8Q8NFY9 601 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 TM4SF18Q96CE8 201 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ZG16BQ96DA0 208 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 SGPP1Q9BX95 441 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 DYRK4Q9NR20 520 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 GPC6Q9Y625 555 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PLD2O14939 933 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 KMOO15229 486 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 NARSO43776 548 aaKnown RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PPM1AP35813 382 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 CCT3P49368 545 aaKnown RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PCYT1AP49585 367 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 MNX1P50219 401 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 AKAP14Q86UN6 197 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 FCRL4Q96PJ5 515 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 GPA33Q99795 319 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 EGLN3Q9H6Z9 239 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 MYNNQ9NPC7 610 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PAK6Q9NQU5 681 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 ZCCHC3Q9NUD5 404 aaKnown RBP20.22■□□□□ 0.83
TRIM28-201ENST00000253024 MUTYHQ9UIF7 546 aa20.22■□□□□ 0.83
TRIM28-201ENST00000253024 PRKYO43930 277 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 SNX4O95219 450 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 CSF2P04141 144 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 ELAVL4P26378 380 aaKnown RBP20.21■□□□□ 0.83
TRIM28-201ENST00000253024 RAB8AP61006 207 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 ALDH6A1Q02252 535 aaKnown RBP20.21■□□□□ 0.83
TRIM28-201ENST00000253024 RASGRP3Q8IV61 690 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 CCDC116Q8IYX3 515 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 C16orf58Q96GQ5 468 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 OPALINQ96PE5 141 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 TREX2Q9BQ50 279 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-201ENST00000253024 UCK2Q9BZX2 261 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 FTSJ1Q9UET6 329 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 WDR37Q9Y2I8 494 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 DENND4CQ5VZ89 1909 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 HMGN4O00479 90 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 RHCEP18577 417 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 COPZ1P61923 177 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 RSBN1Q5VWQ0 802 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-201ENST00000253024 PLAG1Q6DJT9 500 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 CAMKMTQ7Z624 323 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 AMZ2Q86W34 360 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 LAS2Q8IYD9 372 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 SHISA5Q8N114 240 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 FCGR1BQ92637 280 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 COQ10AQ96MF6 247 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 TSSK6Q9BXA6 273 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 BARHL1Q9BZE3 327 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 OR51I1Q9H343 314 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 PCDHGA3Q9Y5H0 932 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 KCNE3Q9Y6H6 103 aa20.21■□□□□ 0.83
TRIM28-201ENST00000253024 EFCAB10A6NFE3 127 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 CCRL2O00421 344 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 HYAL3O43820 417 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 CSO75390 466 aaKnown RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 PAK4O96013 591 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 PTX3P26022 381 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 MAT2AP31153 395 aaKnown RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 TNFSF8P32971 234 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 PCBP3P57721 371 aaKnown RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 KHDRBS2Q5VWX1 349 aaKnown RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 NRARPQ7Z6K4 114 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 LRRC56Q8IYG6 542 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 DENND6BQ8NEG7 585 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 MAGEB10Q96LZ2 347 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 HHATLQ9HCP6 504 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 DDX28Q9NUL7 540 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms