RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LCP2Q13094 533 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 CYLC2Q14093 348 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 GIT2Q14161 759 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 MEF2DQ14814 521 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 SLC17A1Q14916 467 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 STXBP2Q15833 593 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 ZNF506Q5JVG8 444 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 SEL1L3Q68CR1 1132 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 C17orf64Q86WR6 236 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 LINC00612Q8N6U2 182 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 ITLN1Q8WWA0 313 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 MRPL24Q96A35 216 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 ESAMQ96AP7 390 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 EPSTI1Q96J88 318 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 TEKT2Q9UIF3 430 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 EXOC7Q9UPT5 735 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 EXOC6BQ9Y2D4 811 aa3.55□□□□□ -1.84
SMCHD1-204ENST00000581226 A0A087WWV3 80 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 SMIM30A4D0T7 59 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 LRRD1A4D1F6 860 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 SLC15A5A6NIM6 579 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 E9PAM4 449 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 DUSP11O75319 330 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 CSDE1O75534 798 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 CHRNGP07510 517 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 HCKP08631 526 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 NUDT17P0C025 328 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 OR9G9P0C7N8 305 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 B4GALT1P15291 398 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 KCNK10P57789 538 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 RPL27P61353 136 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 SMU1Q2TAY7 513 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 WSCD2Q2TBF2 565 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 C1QTNF12Q5T7M4 302 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 PRAMEF8Q5VWM4 474 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 ARMCX5Q6P1M9 558 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 Q6ZR54 194 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 GVQW1Q8N7I0 195 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 SAMD12Q8N8I0 201 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 HAS2Q92819 552 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 RAB40CQ96S21 281 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 S1PR3Q99500 378 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 AGPAT1Q99943 283 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 NUSAP1Q9BXS6 441 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 WWP1Q9H0M0 922 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 C2orf40Q9H1Z8 148 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 AKIRIN1Q9H9L7 192 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 MAGEF1Q9HAY2 307 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 IL1RAPL2Q9NP60 686 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 ZNF581Q9P0T4 197 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 TRPC4Q9UBN4 977 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 STX8Q9UNK0 236 aa3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 MRPL11Q9Y3B7 192 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-204ENST00000581226 CACNB4O00305 520 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 PSMD3O43242 534 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ZNF354AO60765 605 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ANXA9O76027 345 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ELK3P41970 407 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 MATKP42679 507 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ALDH3B1P43353 468 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 TNFSF10P50591 281 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 NME5P56597 212 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 POU5F1Q01860 360 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 HEPACAMQ14CZ8 416 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 OR1C1Q15619 314 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 CCL14Q16627 93 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 IFI44LQ53G44 452 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 NHLRC3Q5JS37 347 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 IYDQ6PHW0 289 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 TMEM270Q6UE05 265 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 CD164L2Q6UWJ8 174 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 HIPK1Q86Z02 1210 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 CCDC71Q8IV32 467 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 WDR49Q8IV35 697 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 CCDC170Q8IYT3 715 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ICA1LQ8NDH6 482 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 RHOXF1Q8NHV9 184 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 TYMSOSQ8TAI1 123 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 GOLGA5Q8TBA6 731 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 KIAA1524Q8TCG1 905 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 UBTD2Q8WUN7 234 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 VMP1Q96GC9 406 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 C16orf58Q96GQ5 468 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 DDX50Q9BQ39 737 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 NTMT1Q9BV86 223 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 OSBPL8Q9BZF1 889 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 SLC5A7Q9GZV3 580 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 CXXC4Q9H2H0 198 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 ARGLU1Q9NWB6 273 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 FGD5Q6ZNL6 1462 aa3.53□□□□□ -1.84
SMCHD1-204ENST00000581226 FAM170AA1A519 330 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 GMNNO75496 209 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 STBD1O95210 358 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 FAM200BP0CF97 657 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 STIP1P31948 543 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 MTIF2P46199 727 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 NOVP48745 357 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 SMSP52788 366 aa3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 ADARP55265 1226 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-204ENST00000581226 KRT83P78385 493 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms