RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HLCSP50747 726 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 TDGF1P3P51864 188 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 VSNL1P62760 191 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SRSF11Q05519 484 aaKnown RBP22.24■■□□□ 1.15
SHMT1-206ENST00000579558 HSDL2Q6YN16 418 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 GALNTL5Q7Z4T8 443 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SLC2A12Q8TD20 617 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SSC4DQ8WTU2 575 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF382Q96SR6 550 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 MRPL1Q9BYD6 325 aaKnown RBP22.24■■□□□ 1.15
SHMT1-206ENST00000579558 TRIM45Q9H8W5 580 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF225Q9UK10 706 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SLC12A4Q9UP95 1085 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 USP9XQ93008 2570 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-206ENST00000579558 DDAH2O95865 285 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 PLIN5Q00G26 463 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 BIKQ13323 160 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 RASA2Q15283 850 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 MAPKAPK3Q16644 382 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 PAGE2Q7Z2X7 111 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 TMEM156Q8N614 296 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF321PQ8N8H1 164 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 CDYL2Q8N8U2 506 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 FAM98AQ8NCA5 519 aaKnown RBP22.23■■□□□ 1.15
SHMT1-206ENST00000579558 SREK1Q8WXA9 508 aaKnown RBP22.23■■□□□ 1.15
SHMT1-206ENST00000579558 TMEM125Q96AQ2 219 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 L3HYPDHQ96EM0 354 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 ADAM29Q9UKF5 820 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 EMCNQ9ULC0 261 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 OSGIN2Q9Y236 505 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 STK38LQ9Y2H1 464 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 HIVEP3Q5T1R4 2406 aa22.23■■□□□ 1.15
SHMT1-206ENST00000579558 ZGRF1Q86YA3 2104 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 ARHGAP10A1A4S6 786 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 GLOD5A6NK44 160 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF500O60304 480 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 CDH16O75309 829 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 MLYCDO95822 493 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 AIFM1O95831 613 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 KLK1P06870 262 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 MYL2P10916 166 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 ALOX15P16050 662 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 MST1P26927 711 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 SSR4P51571 173 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 FAM219BQ5XKK7 198 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 SH2D5Q6ZV89 423 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 GPRIN3Q6ZVF9 776 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF227Q86WZ6 799 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 METTL4Q8N3J2 472 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 PPWD1Q96BP3 646 aaKnown RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 RBM18Q96H35 190 aaKnown RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 LIN28AQ9H9Z2 209 aaKnown RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 BRF2Q9HAW0 419 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 COPS7AQ9UBW8 275 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 ERRFI1Q9UJM3 462 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 SLC5A6Q9Y289 635 aa22.22■■□□□ 1.15
SHMT1-206ENST00000579558 YARS2Q9Y2Z4 477 aaKnown RBP22.22■■□□□ 1.15
SHMT1-206ENST00000579558 DYRK3O43781 588 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 NME2P1O60361 137 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 GPR75O95800 540 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 KRT6AP02538 564 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 KRT6BP04259 564 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 NME2P22392 152 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 CCT5P48643 541 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 KRT6CP48668 564 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 KCNK10P57789 538 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 CCNYL2Q5T2Q4 361 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 GFRALQ6UXV0 394 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 ZYG11AQ6WRX3 759 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 C16orf47Q6ZP98 133 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-206ENST00000579558 CYP4Z2PQ8N1L4 340 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 ZNF721Q8TF20 911 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 CCDC126Q96EE4 140 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 HBEGFQ99075 208 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 PELOQ9BRX2 385 aaKnown RBP22.21■■□□□ 1.15
SHMT1-206ENST00000579558 TEX10Q9NXF1 929 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-206ENST00000579558 MYOTQ9UBF9 498 aa22.21■■□□□ 1.15
SHMT1-206ENST00000579558 ASPDHA6ND91 283 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 TMEM200CA6NKL6 621 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 WASHC1A8K0Z3 465 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 MANBAO00462 879 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 OR10H2O60403 315 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 OR2J2O76002 312 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 SLU7O95391 586 aaKnown RBP22.2■■□□□ 1.14
SHMT1-206ENST00000579558 PROCP04070 461 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 HMOX2P30519 316 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 LCP2Q13094 533 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 CCDC153Q494R4 210 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 TCHHL1Q5QJ38 904 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-206ENST00000579558 OR52E8Q6IFG1 317 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 DGAT2L6Q6ZPD8 337 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 COMMD6Q7Z4G1 85 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 PNPLA5Q7Z6Z6 429 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-206ENST00000579558 ST13P4Q8IZP2 240 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-206ENST00000579558 CCNYL1Q8N7R7 359 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 OR8K3Q8NH51 312 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 OR2W6PQ8NHA6 318 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 UCN3Q969E3 161 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 SENP5Q96HI0 755 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-206ENST00000579558 ART5Q96L15 291 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms