RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MSANTD4Q8NCY6 345 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 PCNPQ8WW12 178 aaKnown RBP3.51□□□□□ -1.85
SCFD1-221ENST00000556534 PTP4A1Q93096 173 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 SNX21Q969T3 373 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 RAB40CQ96S21 281 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 CLEC5AQ9NY25 188 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 PLEK2Q9NYT0 353 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 OR1A2Q9Y585 309 aa3.51□□□□□ -1.85
SCFD1-221ENST00000556534 ACEP12821 1306 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 TMCO5BA8MYB1 307 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 IGHG3P01860 377 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 SERPINB6P35237 376 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 ELK3P41970 407 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 LCP2Q13094 533 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 PEX6Q13608 980 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 SLC17A1Q14916 467 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 SNRNP48Q6IEG0 339 aaKnown RBP3.5□□□□□ -1.85
SCFD1-221ENST00000556534 ALKBH5Q6P6C2 394 aaKnown RBP3.5□□□□□ -1.85
SCFD1-221ENST00000556534 IYDQ6PHW0 289 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 LAX1Q8IWV1 398 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 CHCHD4Q8N4Q1 142 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF781Q8N8C0 355 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 TRPV3Q8NET8 790 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 FLVCR1-AS1Q8TAF5 88 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 GANCQ8TET4 914 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 ULK4Q96C45 1275 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 PCED1BQ96HM7 432 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 ANKRD27Q96NW4 1050 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 HSD17B14Q9BPX1 270 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 SP140LQ9H930 580 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 MTRRQ9UBK8 725 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 MGAT4AQ9UM21 535 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 CPQQ9Y646 472 aa3.5□□□□□ -1.85
SCFD1-221ENST00000556534 TEX48A0A1B0GUV7 120 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 TMEM129A0AVI4 362 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 TRIM49BA6NDI0 452 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 FOXI3A8MTJ6 420 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 PHOX2AO14813 284 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 CSO75390 466 aaKnown RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 STBD1O95210 358 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 OR9G9P0C7N8 305 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 FOSL2P15408 326 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 GPX3P22352 226 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 SPRP35270 261 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ID1P41134 155 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 RPL27P61353 136 aaKnown RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF674Q2M3X9 581 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 VWA2Q5GFL6 755 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 NHLRC3Q5JS37 347 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 RFWD3Q6PCD5 774 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ZSCAN30Q86W11 494 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 C17orf64Q86WR6 236 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 PRCCQ92733 491 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 MRPL24Q96A35 216 aaKnown RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 S1PR3Q99500 378 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 WWP1Q9H0M0 922 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 DBNDD1Q9H9R9 158 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 FAM212BQ9NTI7 297 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 CWC25Q9NXE8 425 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF107Q9UII5 783 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 MRPL11Q9Y3B7 192 aaKnown RBP3.49□□□□□ -1.85
SCFD1-221ENST00000556534 FBXO7Q9Y3I1 522 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ABCC9O60706 1549 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF318Q5VUA4 2279 aa3.49□□□□□ -1.85
SCFD1-221ENST00000556534 A0A1W2PQ72 361 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 BICDL2A1A5D9 508 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 NEDD8-MDP1E9PL57 170 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 KIAA0513O60268 411 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CRCPO75575 148 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 OR6A2O95222 327 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 BAG2O95816 211 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 NUDT17P0C025 328 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CCDC159P0C7I6 412 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 FAM200BP0CF97 657 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 EZRP15311 586 aaKnown RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ADARP55265 1226 aaKnown RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 GABPAQ06546 454 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 OR1C1Q15619 314 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 STXBP2Q15833 593 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 WSCD2Q2TBF2 565 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 DCAF12Q5T6F0 453 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 PRAMEF8Q5VWM4 474 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 KCTD11Q693B1 232 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 GET4Q7L5D6 327 aaPredicted RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CCDC91Q7Z6B0 441 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ITIH5Q86UX2 942 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CCDC71Q8IV32 467 aaPredicted RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 THEM5Q8N1Q8 247 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ZPLD1Q8TCW7 415 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 MGARPQ8TDB4 240 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 AGAP11Q8TF27 550 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CDHR1Q96JP9 859 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 AGPAT1Q99943 283 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 FUT8Q9BYC5 575 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 CXXC4Q9H2H0 198 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 MMADHCQ9H3L0 296 aaPredicted RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ZNF446Q9NWS9 450 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 TECRQ9NZ01 308 aaKnown RBP3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ERVK-19Q9WJR5 959 aa3.48□□□□□ -1.85
SCFD1-221ENST00000556534 ITM2BQ9Y287 266 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms