RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SORDQ00796 357 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 CRYZQ08257 329 aaKnown RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 E2F2Q14209 437 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SLBPQ14493 270 aaKnown RBP eCLIP6.72□□□□□ -1.33
YBX3-209ENST00000540747 EFTUD2Q15029 972 aaKnown RBP eCLIP6.72□□□□□ -1.33
YBX3-209ENST00000540747 C18orf21Q32NC0 220 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 TEDDM1Q5T9Z0 273 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 ADNP2Q6IQ32 1131 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 TMIGD1Q6UXZ0 262 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 ZNF793Q6ZN11 406 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 FAM47EQ6ZV65 393 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 C9orf40Q8IXQ3 194 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 RASGEF1CQ8N431 466 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 GPATCH11Q8N954 259 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 TNIP2Q8NFZ5 429 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SREK1Q8WXA9 508 aaKnown RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 ANKRD9Q96BM1 317 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 RHBDF1Q96CC6 855 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 WDR34Q96EX3 536 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 COX4I2Q96KJ9 171 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SERINC2Q96SA4 455 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 MDFIQ99750 246 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 MCMBPQ9BTE3 642 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 ALOXE3Q9BYJ1 711 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 TRIM54Q9BYV2 358 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 OR8D2Q9GZM6 311 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 PITHD1Q9GZP4 211 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 PRDM14Q9GZV8 571 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SLC6A15Q9H2J7 730 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 UBQLN3Q9H347 655 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 EHD1Q9H4M9 534 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 LYRM4Q9HD34 91 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 ZFP64Q9NPA5 681 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 PRDM7Q9NQW5 492 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 ZNF629Q9UEG4 869 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 FOXD3Q9UJU5 478 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 CNOT11Q9UKZ1 510 aaKnown RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 ZNF490Q9ULM2 529 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 EDARQ9UNE0 448 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 MRPS33Q9Y291 106 aaKnown RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 VWA7Q9Y334 891 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SAR1BQ9Y6B6 198 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 CHCHD2Q9Y6H1 151 aaPredicted RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 IKBKGQ9Y6K9 419 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 CLCA3PQ9Y6N3 262 aa6.72□□□□□ -1.33
YBX3-209ENST00000540747 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.72□□□□□ -1.33
YBX3-209ENST00000540747 KIAA1549Q9HCM3 1950 aa6.71□□□□□ -1.33
YBX3-209ENST00000540747 ANK2Q01484 3957 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 A0A088AWK7 358 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 MYOCOSA0A1B0GUC4 107 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 NPEPPSL1A6NEC2 478 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 KIAA1324LA8MWY0 1029 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 C17orf105B2RV13 164 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 HRKO00198 91 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 DVL2O14641 736 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 POLR3GO15318 223 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 TRIM3O75382 744 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 CLPSP04118 112 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 HRGP04196 525 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 P04436 131 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 FBXO45P0C2W1 286 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 RHOXF2BP0C7M4 288 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 GNAZP19086 355 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 EPORP19235 508 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 ZNF10P21506 573 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 SAT1P21673 171 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 BMP5P22003 454 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 TACR1P25103 407 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 CXCR5P32302 372 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 GGT5P36269 586 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 GDF5P43026 501 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 HNMTP50135 292 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 PLA2G16P53816 162 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 MTTPP55157 894 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 WNT3P56703 355 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 DCAF7P61962 342 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 ASPHQ12797 758 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 PDAP1Q13442 181 aaKnown RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 BMPR2Q13873 1038 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 SERTAD2Q14140 314 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 FRG1Q14331 258 aaKnown RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 SPANXN3Q5MJ09 141 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 FNDC7Q5VTL7 733 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 SLC22A10Q63ZE4 541 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 NSUN5P2Q63ZY6 315 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 TMEM198Q66K66 360 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 STEAP4Q687X5 459 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 FAM45BPQ6NSW5 357 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 TRMT10BQ6PF06 316 aaKnown RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 DGAT2L6Q6ZPD8 337 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 MAATS1Q7Z4T9 603 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 LACC1Q8IV20 430 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 PPIL6Q8IXY8 311 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 SLC15A4Q8N697 577 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 ZNF441Q8N8Z8 693 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 OR5L2Q8NGL0 311 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 GOT1L1Q8NHS2 421 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 FAM45AQ8TCE6 357 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 ANKRD49Q8WVL7 239 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 KIAA1191Q96A73 305 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms