RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	AP1S2	P56377	157 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	PPP2R2B	Q00005	443 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	THOC5	Q13769	683 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	TPSAB1	Q15661	275 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	OPN5	Q6U736	354 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	CES3	Q6UWW8	571 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	LACC1	Q8IV20	430 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ULK2	Q8IYT8	1036 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	CA13	Q8N1Q1	262 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	MYO1H	Q8N1T3	1032 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	DAZL	Q92904	295 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	SCYL1	Q96KG9	808 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	HIST1H2AH	Q96KK5	128 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	HIST1H2AJ	Q99878	128 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	H2AFJ	Q9BTM1	129 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	TMEM109	Q9BVC6	243 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	NPL	Q9BXD5	320 aa	Predicted RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	EXO5	Q9H790	373 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	PNO1	Q9NRX1	252 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	SPRR3	Q9UBC9	169 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRMT6	Q9UJA5	497 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ATG4B	Q9Y4P1	393 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	SCN3A	Q9NY46	2000 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079		A0A088AWK7	358 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	EIF3H	O15372	352 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	B3GALT4	O96024	378 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SERPINA6	P08185	405 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CELA3A	P09093	270 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SMIM10L1	P0DMW3	83 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF10	P21506	573 aa	Predicted RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CEACAM8	P31997	349 aa	Predicted RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	MAGEA6	P43360	314 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	HK2	P52789	917 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	RAB8A	P61006	207 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	STXBP1	P61764	594 aa	Known RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SARNP	P82979	210 aa	Known RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	REEP5	Q00765	189 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SLC13A2	Q13183	592 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CSHL1	Q14406	222 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SF3B4	Q15427	424 aa	Known RBP eCLIP	11.48	□□□□□ -0.57	2e-8	■■■■■ 39
CAPN1-223	ENST00000533079	UAP1	Q16222	522 aa	Predicted RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	XKR6	Q5GH73	641 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079		Q5PR19	223 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CATSPERE	Q5SY80	951 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF549	Q6P9A3	640 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	PRSS57	Q6UWY2	283 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	MBOAT1	Q6ZNC8	495 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CAPN12	Q6ZSI9	719 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	PRUNE1	Q86TP1	453 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF595	Q8IYB9	648 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	GOLGA6L1	Q8N7Z2	621 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	MORN4	Q8NDC4	146 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR5L2	Q8NGL0	311 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR56A3	Q8NH54	315 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CALML6	Q8TD86	181 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SLC5A11	Q8WWX8	675 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ATL1	Q8WXF7	558 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SMPDL3B	Q92485	455 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	GAL3ST3	Q96A11	431 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ALKBH8	Q96BT7	664 aa	Known RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	HSPBAP1	Q96EW2	488 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	SMIM10	Q96HG1	83 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	PIP5K1A	Q99755	562 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	YIPF4	Q9BSR8	244 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	RHBG	Q9H310	441 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ACKR4	Q9NPB9	350 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	PRTFDC1	Q9NRG1	225 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ALKBH4	Q9NXW9	302 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ADAMTS6	Q9UKP5	1117 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	BOK	Q9UMX3	212 aa	Predicted RBP	11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	CLCA3P	Q9Y6N3	262 aa		11.48	□□□□□ -0.57
CAPN1-223	ENST00000533079	ARHGAP21	Q5T5U3	1957 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	MAGEB16	A2A368	324 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	AHRR	A9YTQ3	701 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079		G3V3Y1	287 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	WWP2	O00308	870 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	EPPIN	O95925	133 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	IL2RA	P01589	272 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZSCAN5DP	P0CG00	497 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	GSTM2	P28161	218 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	HPD	P32754	393 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	SLC1A2	P43004	574 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	DNASE1L1	P49184	302 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	RAB38	P57729	211 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	GPS1	Q13098	491 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	RCN2	Q14257	317 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ACSF3	Q4G176	576 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	SEM1	Q6ZVN7	128 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	CXorf67	Q86X51	503 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	P3H2	Q8IVL5	708 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	DENND6A	Q8IWF6	608 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	PPIL6	Q8IXY8	311 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	PM20D2	Q8IYS1	436 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	DND1	Q8IYX4	353 aa	Known RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	LRRC25	Q8N386	305 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ANKRD53	Q8N9V6	530 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	NAXE	Q8NCW5	288 aa		11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms