RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ANP32DO95626 131 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 AIFM1O95831 613 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 B3GALT4O96024 378 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 IFNA16P05015 189 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 SNRPB2P08579 225 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 ALDOCP09972 364 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 CSNK2A2P19784 350 aaPredicted RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 TCN2P20062 427 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 RORAP35398 523 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 FOLR3P41439 243 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 MRPL19P49406 292 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 HNRNPH2P55795 449 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 MAT1AQ00266 395 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 CYLC2Q14093 348 aaPredicted RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 RTP5Q14D33 572 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 MRM1Q6IN84 353 aaKnown RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 FAM71E1Q6IPT2 247 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 TICAM1Q8IUC6 712 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 PCYOX1LQ8NBM8 494 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 OR5T3Q8NGG3 340 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 TSPEARQ8WU66 669 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 TESCQ96BS2 214 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 C11orf24Q96F05 449 aaPredicted RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 DUSP26Q9BV47 211 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 ZNF717Q9BY31 904 aaPredicted RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 BHLHE41Q9C0J9 482 aaPredicted RBP9.52□□□□□ -0.88
CD44-207ENST00000425428 TGIF2Q9GZN2 237 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 WDR54Q9H977 334 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 SAR1AQ9NR31 198 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 MKL2Q9ULH7 1088 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 ATG4BQ9Y4P1 393 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 NEUROG3Q9Y4Z2 214 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 A0A1W2PR48 441 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 TRABD2BA6NFA1 517 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 BBIP1A8MTZ0 92 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 DXOO77932 396 aaKnown RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 FURINP09958 794 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 RAB40ALP0C0E4 278 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 ZGLP1P0C6A0 271 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 TNNI3P19429 210 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 GPC1P35052 558 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 GCGRP47871 477 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 MANFP55145 182 aaKnown RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 C21orf58P58505 322 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 UFM1P61960 85 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 MXRA7P84157 204 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 PLIN5Q00G26 463 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 FAM174BQ3ZCQ3 159 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 FAM219BQ5XKK7 198 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 SLC48A1Q6P1K1 146 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 PAOXQ6QHF9 649 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 MSANTD1Q6ZTZ1 278 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 TRPM8Q7Z2W7 1104 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 ARHGEF39Q8N4T4 335 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 TRIML2Q8N7C3 387 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 DNAJB8Q8NHS0 232 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 RP9Q8TA86 221 aaKnown RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 STT3BQ8TCJ2 826 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 EXOSC8Q96B26 276 aaKnown RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 ERP27Q96DN0 273 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 ZNF764Q96H86 408 aaPredicted RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 ITCHQ96J02 903 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 PTCHD1Q96NR3 888 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 DGAT2Q96PD7 388 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 OR52E6Q96RD3 313 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 CRB3Q9BUF7 120 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 NMUR2Q9GZQ4 415 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 AICDAQ9GZX7 198 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 CHST8Q9H2A9 424 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 SLC26A1Q9H2B4 701 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 SLC35C2Q9NQQ7 365 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 FAM120CQ9NX05 1096 aaKnown RBP9.52□□□□□ -0.89
CD44-207ENST00000425428 KCMF1Q9P0J7 381 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 ATP6V1HQ9UI12 483 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 NUP210LQ5VU65 1888 aa9.52□□□□□ -0.89
CD44-207ENST00000425428 GLOD5A6NK44 160 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 C4orf51C9J302 202 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 BRINP1O60477 761 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 TBX19O60806 448 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 CDC123O75794 336 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 GPR75O95800 540 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 DLGAP3O95886 979 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 ONECUT2O95948 504 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PGRP06401 933 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 LIPCP11150 499 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PORP16435 677 aaPredicted RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 ZNF28P17035 718 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 GPX3P22352 226 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 TACR1P25103 407 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PRDX6P30041 224 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 DLSTP36957 453 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 RASSF2P50749 326 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 XKP51811 444 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 EMP2P54851 167 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 PCBP4P57723 403 aaKnown RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 KLF10Q13118 480 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 ART3Q13508 389 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 UBAP2LQ14157 1087 aaKnown RBP9.51□□□□□ -0.89
CD44-207ENST00000425428 NCF4Q15080 339 aa9.51□□□□□ -0.89
CD44-207ENST00000425428 NSDHLQ15738 373 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms