RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CYR61O00622 381 aa8.79□□□□□ -1
LDLR-211ENST00000560173 UBFD1O14562 309 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 TYROBPO43914 113 aa8.79□□□□□ -1
LDLR-211ENST00000560173 PRMT3O60678 531 aa8.79□□□□□ -1
LDLR-211ENST00000560173 SPAG7O75391 227 aa8.79□□□□□ -1
LDLR-211ENST00000560173 EEDO75530 441 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 SEC24DO94855 1032 aaPredicted RBP8.79□□□□□ -1
LDLR-211ENST00000560173 OR4F21O95013 312 aa8.79□□□□□ -1
LDLR-211ENST00000560173 ESRRBO95718 433 aa8.79□□□□□ -1
LDLR-211ENST00000560173 ENO1P06733 434 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 CELA2AP08217 269 aa8.79□□□□□ -1
LDLR-211ENST00000560173 PRR35P0CG20 571 aa8.79□□□□□ -1
LDLR-211ENST00000560173 CREB1P16220 341 aa8.79□□□□□ -1
LDLR-211ENST00000560173 MAOAP21397 527 aa8.79□□□□□ -1
LDLR-211ENST00000560173 BSGP35613 385 aa8.79□□□□□ -1
LDLR-211ENST00000560173 NAGLUP54802 743 aa8.79□□□□□ -1
LDLR-211ENST00000560173 GYS2P54840 703 aa8.79□□□□□ -1
LDLR-211ENST00000560173 NAA20P61599 178 aa8.79□□□□□ -1
LDLR-211ENST00000560173 RCN2Q14257 317 aa8.79□□□□□ -1
LDLR-211ENST00000560173 PCLAFQ15004 111 aa8.79□□□□□ -1
LDLR-211ENST00000560173 SFT2D3Q587I9 215 aa8.79□□□□□ -1
LDLR-211ENST00000560173 SGO1Q5FBB7 561 aa8.79□□□□□ -1
LDLR-211ENST00000560173 TCHHL1Q5QJ38 904 aaPredicted RBP8.79□□□□□ -1
LDLR-211ENST00000560173 LIPMQ5VYY2 423 aa8.79□□□□□ -1
LDLR-211ENST00000560173 TTC19Q6DKK2 380 aaPredicted RBP8.79□□□□□ -1
LDLR-211ENST00000560173 OR4C11Q6IEV9 310 aa8.79□□□□□ -1
LDLR-211ENST00000560173 FRMD7Q6ZUT3 714 aa8.79□□□□□ -1
LDLR-211ENST00000560173 C10orf107Q8IVU9 208 aa8.79□□□□□ -1
LDLR-211ENST00000560173 PARP9Q8IXQ6 854 aa8.79□□□□□ -1
LDLR-211ENST00000560173 KBTBD2Q8IY47 623 aa8.79□□□□□ -1
LDLR-211ENST00000560173 ZNF595Q8IYB9 648 aa8.79□□□□□ -1
LDLR-211ENST00000560173 ZCCHC7Q8N3Z6 543 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 CDYL2Q8N8U2 506 aa8.79□□□□□ -1
LDLR-211ENST00000560173 FAM47BQ8NA70 645 aa8.79□□□□□ -1
LDLR-211ENST00000560173 TCP10LQ8TDR4 215 aa8.79□□□□□ -1
LDLR-211ENST00000560173 AGAP11Q8TF27 550 aa8.79□□□□□ -1
LDLR-211ENST00000560173 MTFMTQ96DP5 389 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 THOC3Q96J01 351 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 PTCHD1Q96NR3 888 aa8.79□□□□□ -1
LDLR-211ENST00000560173 FAM111AQ96PZ2 611 aa8.79□□□□□ -1
LDLR-211ENST00000560173 MAPKAP1Q9BPZ7 522 aa8.79□□□□□ -1
LDLR-211ENST00000560173 TUBB6Q9BUF5 446 aa8.79□□□□□ -1
LDLR-211ENST00000560173 LHPPQ9H008 270 aa8.79□□□□□ -1
LDLR-211ENST00000560173 ZNF552Q9H707 407 aaPredicted RBP8.79□□□□□ -1
LDLR-211ENST00000560173 DDX31Q9H8H2 851 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 NECTIN3Q9NQS3 549 aa8.79□□□□□ -1
LDLR-211ENST00000560173 PRDM9Q9NQV7 894 aa8.79□□□□□ -1
LDLR-211ENST00000560173 FARSBQ9NSD9 589 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 INTS9Q9NV88 658 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 SLC17A7Q9P2U7 560 aa8.79□□□□□ -1
LDLR-211ENST00000560173 SNX6Q9UNH7 406 aa8.79□□□□□ -1
LDLR-211ENST00000560173 MRPS33Q9Y291 106 aaKnown RBP8.79□□□□□ -1
LDLR-211ENST00000560173 ZNF451Q9Y4E5 1061 aa8.79□□□□□ -1
LDLR-211ENST00000560173 CLDN16Q9Y5I7 305 aa8.79□□□□□ -1
LDLR-211ENST00000560173 A0A0A6YYD5 115 aa8.78□□□□□ -1
LDLR-211ENST00000560173 TGFBR3LH3BV60 316 aa8.78□□□□□ -1
LDLR-211ENST00000560173 SLC28A2O43868 658 aa8.78□□□□□ -1
LDLR-211ENST00000560173 TMPRSS11DO60235 418 aa8.78□□□□□ -1
LDLR-211ENST00000560173 KLHL41O60662 606 aa8.78□□□□□ -1
LDLR-211ENST00000560173 ZWINTO95229 277 aa8.78□□□□□ -1
LDLR-211ENST00000560173 PDYNP01213 254 aa8.78□□□□□ -1
LDLR-211ENST00000560173 KRT6AP02538 564 aa8.78□□□□□ -1
LDLR-211ENST00000560173 KRT6BP04259 564 aa8.78□□□□□ -1
LDLR-211ENST00000560173 ALPPP05187 535 aa8.78□□□□□ -1
LDLR-211ENST00000560173 LSP1P33241 339 aa8.78□□□□□ -1
LDLR-211ENST00000560173 SOX11P35716 441 aa8.78□□□□□ -1
LDLR-211ENST00000560173 KRT6CP48668 564 aa8.78□□□□□ -1
LDLR-211ENST00000560173 HTR6P50406 440 aa8.78□□□□□ -1
LDLR-211ENST00000560173 HSD17B7P56937 341 aa8.78□□□□□ -1
LDLR-211ENST00000560173 OR4D2P58180 307 aa8.78□□□□□ -1
LDLR-211ENST00000560173 SLAMF1Q13291 335 aa8.78□□□□□ -1
LDLR-211ENST00000560173 CFAP157Q5JU67 520 aa8.78□□□□□ -1
LDLR-211ENST00000560173 IRAK1BP1Q5VVH5 260 aa8.78□□□□□ -1
LDLR-211ENST00000560173 PLAG1Q6DJT9 500 aa8.78□□□□□ -1
LDLR-211ENST00000560173 MRM1Q6IN84 353 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 PAPD4Q6PIY7 484 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 RIPOR1Q6ZS17 1223 aa8.78□□□□□ -1
LDLR-211ENST00000560173 EXOC3L1Q86VI1 746 aa8.78□□□□□ -1
LDLR-211ENST00000560173 NUDT13Q86X67 352 aa8.78□□□□□ -1
LDLR-211ENST00000560173 PTRH1Q86Y79 214 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 HPS6Q86YV9 775 aa8.78□□□□□ -1
LDLR-211ENST00000560173 AMER2Q8N7J2 671 aa8.78□□□□□ -1
LDLR-211ENST00000560173 METTL6Q8TCB7 284 aa8.78□□□□□ -1
LDLR-211ENST00000560173 DYDC1Q8WWB3 177 aa8.78□□□□□ -1
LDLR-211ENST00000560173 SELENOMQ8WWX9 145 aa8.78□□□□□ -1
LDLR-211ENST00000560173 PSMF1Q92530 271 aa8.78□□□□□ -1
LDLR-211ENST00000560173 HBEGFQ99075 208 aa8.78□□□□□ -1
LDLR-211ENST00000560173 MRPL1Q9BYD6 325 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 NSRP1Q9H0G5 558 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 EPN3Q9H201 632 aa8.78□□□□□ -1
LDLR-211ENST00000560173 CCDC134Q9H6E4 229 aa8.78□□□□□ -1
LDLR-211ENST00000560173 BRF2Q9HAW0 419 aa8.78□□□□□ -1
LDLR-211ENST00000560173 MID1IP1Q9NPA3 183 aa8.78□□□□□ -1
LDLR-211ENST00000560173 PRTFDC1Q9NRG1 225 aa8.78□□□□□ -1
LDLR-211ENST00000560173 LYARQ9NX58 379 aaKnown RBP8.78□□□□□ -1
LDLR-211ENST00000560173 C5AR2Q9P296 337 aa8.78□□□□□ -1
LDLR-211ENST00000560173 SCN2AQ99250 2005 aa8.78□□□□□ -1
LDLR-211ENST00000560173 TNRC6AQ8NDV7 1962 aaKnown RBP8.77□□□□□ -1
LDLR-211ENST00000560173 BLACEA4D250 179 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 GMNCA6NCL1 334 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms