RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RHCGQ9UBD6 479 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ENOPH1Q9UHY7 261 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 CLEC4AQ9UMR7 237 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 STUB1Q9UNE7 303 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TRAPPC4Q9Y296 219 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ALPK3Q96L96 1907 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 IGLV3-10A0A075B6K4 115 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TEX46H3BTG2 121 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 M0R233 179 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 NRG2O14511 850 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 DNASE1P24855 282 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 CSTF2P33240 577 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 SOAT1P35610 550 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 FEN1P39748 380 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF33AQ06730 810 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ALFQ53S48 1182 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 BBS7Q8IWZ6 715 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 RTL3Q8N8U3 475 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 MAL2Q969L2 176 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 C11orf24Q96F05 449 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TRMT61AQ96FX7 289 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 CAPNS2Q96L46 248 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 FAM126AQ9BYI3 521 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TTYH1Q9H313 450 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TBC1D17Q9HA65 648 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 NDRG2Q9UN36 371 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 SCML2Q9UQR0 700 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 LOC730098B7Z3J9 87 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 E2F3O00716 465 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 C4BPBP20851 252 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ENPP1P22413 925 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 LHCGRP22888 699 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TTPAP49638 278 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ZXDBP98169 803 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 LRRC32Q14392 662 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF79Q15937 498 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 PLAG1Q6DJT9 500 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 MZT2AQ6P582 158 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 KDELC1Q6UW63 502 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 CCDC117Q8IWD4 279 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 RDH10Q8IZV5 341 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 GHDCQ8N2G8 530 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 PCSK9Q8NBP7 692 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 AQP11Q8NBQ7 271 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 ST8SIA4Q92187 359 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 SGTBQ96EQ0 304 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 IMP4Q96G21 291 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 PAWRQ96IZ0 340 aaKnown RBP9.19□□□□□ -0.94
CCDC40-212ENST00000574799 TRIM62Q9BVG3 475 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 RBCK1Q9BYM8 510 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 GPR63Q9BZJ6 419 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 CDCP1Q9H5V8 836 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 PFDN2Q9UHV9 154 aa9.19□□□□□ -0.94
CCDC40-212ENST00000574799 PRUNE2Q8WUY3 3088 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 LOC105369274A0A096LPK9 316 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 KPNA5O15131 536 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 LDB2O43679 373 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 OR10H3O60404 316 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ALPPP05187 535 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ZDHHC11BP0C7U3 371 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CFL1P23528 166 aaKnown RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ACVR2AP27037 513 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 OR1E1P30953 314 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CNR2P34972 360 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CDKN2CP42773 168 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ZFP36L2P47974 494 aaKnown RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CDKN1CP49918 316 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 HTRA3P83110 453 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 GRK1Q15835 563 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 EXOC3L2Q2M3D2 409 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 USP45Q70EL2 814 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 VN1R5Q7Z5H4 357 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 OR4N4Q8N0Y3 316 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 IGSF8Q969P0 613 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 AP2M1Q96CW1 435 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CPPED1Q9BRF8 314 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ADGRE3Q9BY15 652 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 NXF2Q9GZY0 626 aaKnown RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ZNF304Q9HCX3 659 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ZMAT5Q9UDW3 170 aaKnown RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CLEC2DQ9UHP7 191 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 FKBPLQ9UIM3 349 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 HCN2Q9UL51 889 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 RAB23Q9ULC3 237 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 WASH4PA8MWX3 477 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ACSL4O60488 711 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 TRIM3O75382 744 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 HAPLN1P10915 354 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 NNMTP40261 264 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 AVPR1BP47901 424 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 SMSP52788 366 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 RPS7P62081 194 aaKnown RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 HSPA14Q0VDF9 509 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 TIGD3Q6B0B8 471 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 SZRD1Q7Z422 152 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CIR1Q86X95 450 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ATAD1Q8NBU5 361 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 LHFPL5Q8TAF8 219 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 FBXW5Q969U6 566 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 VOPP1Q96AW1 172 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms