RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ANKRD61A6NGH8 418 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDTLA6NHG4 134 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CASTOR2A6NHX0 329 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6C65A6NJZ3 312 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EIF4E1BA6NMX2 242 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C15orf62A8K5M9 175 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSPB2A8KAH6 182 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 A8MU76 341 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDZK1P1A8MUH7 402 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VGLL3A8MV65 326 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MEI4A8MW99 385 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PALM2-AKAP2B1ALY0 433 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRR32B1ATL7 298 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RSPH10B2B2RC85 870 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SUPT3HB4E1H0 165 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD66B4E2M5 251 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WASH3PC4AMC7 463 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C9JVG2 144 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 E9PMD0 336 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAL4DF5H284 164 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 F8VZ95 297 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MS4A18H0YCH9 400 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STMND1H3BQB6 276 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOLGA8TH3BQL2 631 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM189-UBE2V1I3L0A0 370 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 J3QR06 171 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFNL4K9M1U5 179 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGK494L7N484 410 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF701M0R085 212 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSMD11O00231 422 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIP1O00291 1037 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN5O00501 218 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBP2O00757 339 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDXKO00764 312 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSPB6O14558 160 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VCYO14598 125 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAM10O14672 748 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF197O14709 1029 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WNT9BO14905 357 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARPC3O15145 178 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MDM4O15151 490 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STX7O15400 261 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNN4O15554 427 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPINT2O43291 252 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF264O43296 627 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGEF9O43307 516 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF208O43345 1280 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 XRCC3O43542 346 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BUD23O43709 281 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LANCL1O43813 399 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXTL3O43909 919 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCDH7O60245 1069 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FGF17O60258 216 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 JAK2O60674 1132 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF2O60811 474 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNJ13O60928 360 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNASEH1O60930 286 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNOT3O75175 753 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP2C2O75185 946 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NIPSNAP2O75323 286 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF217O75362 1048 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCAS1O75363 584 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GMNNO75496 209 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLN5O75503 358 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPS6KA5O75582 802 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRTAPO75718 401 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6AP2O75787 350 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C1QL1O75973 258 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE7O76087 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDNO94850 711 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UFL1O94874 794 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMCC1O94876 653 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF432O94892 652 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFA7O95182 113 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAPSS2O95340 614 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYNGR4O95473 234 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VNN1O95497 513 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACSL3O95573 720 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANP32DO95626 131 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FGFR1OPO95684 399 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GNA14O95837 355 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNAI1O95863 264 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TGM6O95932 706 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PGK1P00558 417 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLAUP00749 431 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSTAP01040 98 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LDLRP01130 860 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPOP01588 193 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGHEP01854 428 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MBP02144 154 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAF1P04049 648 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WNT1P04628 370 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPM3P06753 285 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PROS1P07225 676 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRYGBP07316 175 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FHP07954 510 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HMBSP08397 361 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLEKP08567 350 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGFBP1P08833 259 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSTA2P09210 222 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms