RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SIAH3Q8IW03 269 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 ZNF595Q8IYB9 648 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 LAS2Q8IYD9 372 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 TMEM178AQ8NBL3 297 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 THAP3Q8WTV1 239 aaPredicted RBP19.36■□□□□ 0.69
SDC1-205ENST00000447124 UBTD2Q8WUN7 234 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 GPR137Q96N19 417 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 FRMD6Q96NE9 622 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 MS4A8Q9BY19 250 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 A0A088AWK7 358 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 TRBV11-1A0A0K0K1C0 115 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 TMEM200CA6NKL6 621 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 NPIPA5E9PKD4 350 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 K7EPI3 171 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 CLDN4O14493 209 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 CTNSO60931 367 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 SLC25A12O75746 678 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 TGFB1P01137 390 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 ZNF10P21506 573 aaPredicted RBP19.35■□□□□ 0.69
SDC1-205ENST00000447124 CA7P43166 264 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 CYB561P49447 251 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 HLCSP50747 726 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 GTF3C1Q12789 2109 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 PAGE2BQ5JRK9 111 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 C16orf47Q6ZP98 133 aaPredicted RBP19.35■□□□□ 0.69
SDC1-205ENST00000447124 RNF175Q8N4F7 328 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 HORMAD2Q8N7B1 307 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 NCLNQ969V3 563 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 GPR78Q96P69 363 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 MAPKAP1Q9BPZ7 522 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 NINJ2Q9NZG7 142 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 FBXW2Q9UKT8 454 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 NPIPA1Q9UND3 350 aa19.35■□□□□ 0.69
SDC1-205ENST00000447124 LRRC14BA6NHZ5 514 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 CCL21O00585 134 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ZNHIT1O43257 154 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 NME2P1O60361 137 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 URI1O94763 535 aaPredicted RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 NME2P22392 152 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ATP5A1P25705 553 aaKnown RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 CKAP4Q07065 602 aaKnown RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 TERF2Q15554 542 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 C3AR1Q16581 482 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 KRTCAP3Q53RY4 240 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 C8orf74Q6P047 294 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ACOT4Q8N9L9 421 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 OR7G3Q8NG95 312 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 RHEBL1Q8TAI7 183 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ADAMTS18Q8TE60 1221 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ITLN2Q8WWU7 325 aaPredicted RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 CCDC120Q96HB5 630 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ALOXE3Q9BYJ1 711 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 LIN28AQ9H9Z2 209 aaKnown RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 SNX15Q9NRS6 342 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 OPTCQ9UBM4 332 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 DMGDHQ9UI17 866 aaKnown RBP19.34■□□□□ 0.69
SDC1-205ENST00000447124 SH3BGRL2Q9UJC5 107 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 ZNF835Q9Y2P0 537 aa19.34■□□□□ 0.69
SDC1-205ENST00000447124 A0A087X1B8 175 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 PCNAP12004 261 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 HPDP32754 393 aaPredicted RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 TGM3Q08188 693 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 DEPDC1Q5TB30 811 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 SP5Q6BEB4 398 aaPredicted RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 MED27Q6P2C8 311 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 CHERPQ8IWX8 916 aaKnown RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 CPSF7Q8N684 471 aaKnown RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 TEX9Q8N6V9 391 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 PTPMT1Q8WUK0 201 aaPredicted RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 VMP1Q96GC9 406 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 C16orf45Q96MC5 204 aaPredicted RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 KCNC2Q96PR1 638 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 TBCDQ9BTW9 1192 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 SORBS1Q9BX66 1292 aaKnown RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 OR51B5Q9H339 312 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 COPS7BQ9H9Q2 264 aaPredicted RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 LYRM4Q9HD34 91 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 ADAP2Q9NPF8 381 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 VTI1BQ9UEU0 232 aa19.33■□□□□ 0.68
SDC1-205ENST00000447124 MRPS33Q9Y291 106 aaKnown RBP19.33■□□□□ 0.68
SDC1-205ENST00000447124 A0A096LPK6 155 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 SAP18O00422 153 aaKnown RBP19.32■□□□□ 0.68
SDC1-205ENST00000447124 FCHO1O14526 889 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 ASNA1O43681 348 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 KLK8O60259 260 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 SLC19A2O60779 497 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 ALDOAP04075 364 aaKnown RBP19.32■□□□□ 0.68
SDC1-205ENST00000447124 RBPJQ06330 500 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.32■□□□□ 0.68
SDC1-205ENST00000447124 SULF2Q8IWU5 870 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 PLD6Q8N2A8 252 aaKnown RBP19.32■□□□□ 0.68
SDC1-205ENST00000447124 MMGT1Q8N4V1 131 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 ZNF321PQ8N8H1 164 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 SRFBP1Q8NEF9 429 aaKnown RBP19.32■□□□□ 0.68
SDC1-205ENST00000447124 UBE2E3Q969T4 207 aa19.32■□□□□ 0.68
SDC1-205ENST00000447124 ANKRD9Q96BM1 317 aaPredicted RBP19.32■□□□□ 0.68
SDC1-205ENST00000447124 CREBBPQ92793 2442 aa19.31■□□□□ 0.68
SDC1-205ENST00000447124 LDB3O75112 727 aa19.31■□□□□ 0.68
SDC1-205ENST00000447124 ITGA10O75578 1167 aa19.31■□□□□ 0.68
SDC1-205ENST00000447124 ZFAND5O76080 213 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms