RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PDLIM2Q96JY6 352 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 NAT9Q9BTE0 207 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 DEFB127Q9H1M4 99 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 CXXC4Q9H2H0 198 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 ADAP2Q9NPF8 381 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 PNO1Q9NRX1 252 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 KCMF1Q9P0J7 381 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 CORO1CQ9ULV4 474 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 KCNE2Q9Y6J6 123 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 GSTM2P28161 218 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 HNF4AP41235 474 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 CDKN2DP55273 166 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 RCN2Q14257 317 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 CRYMQ14894 314 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 RBBP5Q15291 538 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 SLC25A35Q3KQZ1 300 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 GXYLT1Q4G148 440 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 NXPE4Q6UWF7 544 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 B3GNT6Q6ZMB0 384 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF595Q8IYB9 648 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 TMEM132CQ8N3T6 1108 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 ANKRD53Q8N9V6 530 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 OR2M7Q8NG81 312 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 GAL3ST3Q96A11 431 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 MAGOHBQ96A72 148 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 TSNARE1Q96NA8 513 aa13.74□□□□□ -0.21
CCDC88B-201ENST00000301897 NPIPA2E9PIF3 369 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 NPIPA3F8WFD2 350 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 DIAPH2O60879 1101 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 OR2J2O76002 312 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 GUCA1CO95843 209 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 IGHG3P01860 377 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 CCDC175P0C221 793 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 ZFP36L2P47974 494 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 GPR143P51810 404 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 IST1P53990 364 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 PPP2R2AP63151 447 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 BTN3A2P78410 334 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 HYAL2Q12891 473 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 SLC13A2Q13183 592 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 ELAVL1Q15717 326 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 TOR1AIP1Q5JTV8 583 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 HSDL2Q6YN16 418 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 TMPRSS11BQ86T26 416 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 THOC6Q86W42 341 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 GAS2L3Q86XJ1 694 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 TGIF2LYQ8IUE0 185 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 CNTN4Q8IWV2 1026 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 PPIL6Q8IXY8 311 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 RPRMLQ8N4K4 120 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 NAT8LQ8N9F0 302 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 DAZLQ92904 295 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 PDLIM5Q96HC4 596 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 SGCZQ96LD1 299 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 SMC6Q96SB8 1091 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 NAP1L3Q99457 506 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM173AQ9BQD7 235 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 TTYH2Q9BSA4 534 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 SPNS1Q9H2V7 528 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 KLHL31Q9H511 634 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 PRTFDC1Q9NRG1 225 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 DEPPQ9NTK1 212 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 DNAJB12Q9NXW2 375 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 MYOTQ9UBF9 498 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 CLCA3PQ9Y6N3 262 aa13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF469Q96JG9 3925 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-201ENST00000301897 A0A1B0GVC2 190 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM166BA8MTA8 275 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 B3GALT2O43825 422 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 SUSD5O60279 629 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 WDR1O75083 606 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 H2AFYO75367 372 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM155BO75949 473 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 GLSO94925 669 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 AHSGP02765 367 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 CXCR5P32302 372 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 RAB38P57729 211 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 SPANXN3Q5MJ09 141 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 RBM20Q5T481 1227 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 TTC27Q6P3X3 843 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 IL20RBQ6UXL0 311 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 RTL4Q6ZR62 310 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 AGGF1Q8N302 714 aaeCLIP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 GOLM1Q8NBJ4 401 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 C7orf57Q8NEG2 295 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 GRK7Q8WTQ7 553 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 ANKRD7Q92527 254 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 TTTY12Q9BZ98 90 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 PITHD1Q9GZP4 211 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 IL1RL2Q9HB29 575 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 LZTFL1Q9NQ48 299 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 PNPLA3Q9NST1 481 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF223Q9UK11 482 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 VWA7Q9Y334 891 aa13.72□□□□□ -0.21
CCDC88B-201ENST00000301897 AQP7O14520 342 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CTAG2O75638 210 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 OR6B1O95007 311 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 GNAZP19086 355 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CNR1P21554 472 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 SAT1P21673 171 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms