RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PEX13Q92968 403 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ZNF599Q96NL3 588 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TAAR9Q96RI9 348 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 GPHA2Q96T91 129 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 NPY6RQ99463 290 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SLC30A2Q9BRI3 323 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HTATIP2Q9BUP3 242 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 MLPHQ9BV36 600 aaPredicted RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 NXF2Q9GZY0 626 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 ALG9Q9H6U8 611 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CATSPERBQ9H7T0 1116 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ACOT13Q9NPJ3 140 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 OLA1Q9NTK5 396 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP28-202ENST00000535607 MRPL39Q9NYK5 338 aaKnown RBP6.35□□□□□ -1.39
USP28-202ENST00000535607 TAS2R9Q9NYW1 312 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 FNIP2Q9P278 1114 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 ERVK-18Q9QC07 812 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 HMGXB4Q9UGU5 601 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 SNX7Q9UNH6 387 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 CLCA2Q9UQC9 943 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 RNF6Q9Y252 685 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 DNAJC15Q9Y5T4 150 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 AP1M2Q9Y6Q5 423 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 MAU2Q9Y6X3 613 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 TRIP11Q15643 1979 aa6.35□□□□□ -1.39
USP28-202ENST00000535607 A0A075B6Q4 140 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 OR2A25A4D2G3 310 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 KRT87PA6NCN2 255 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SNTNA6NMZ2 147 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 B5MCH6 92 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 FAM227AF5H4B4 570 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 H3BML4 177 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CCRL2O00421 344 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 STX16O14662 325 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 POLR1CO15160 346 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 B4GAT1O43505 415 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SERPINI2O75830 405 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SNAPC5O75971 98 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CDK14O94921 469 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 KCNK2O95069 426 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 JCHAINP01591 159 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SLC4A1P02730 911 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 IL6P05231 212 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 HMBSP08397 361 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 HTR1AP08908 422 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 EFNA1P20827 205 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 HRH2P25021 359 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 ACVR2AP27037 513 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 DCTP40126 519 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CRYBB1P53674 252 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 LSM3P62310 102 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 MRPS6P82932 125 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 MBTD1Q05BQ5 628 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SLC13A2Q13183 592 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 DGCR6Q14129 220 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 POU6F1Q14863 301 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SMAD1Q15797 465 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 TBCEQ15813 527 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 UGT3A2Q3SY77 523 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CCDC58Q4VC31 144 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RAB6CQ53S08 254 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 INO80DQ53TQ3 878 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 RABL3Q5HYI8 236 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 KIAA1614Q5VZ46 1190 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 ATG9BQ674R7 924 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 ZNF280DQ6N043 979 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 MZT2BQ6NZ67 158 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 NOTUMQ6P988 496 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 TBPL2Q6SJ96 375 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 GDPGP1Q6ZNW5 385 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CREB3L2Q70SY1 520 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SYVN1Q86TM6 617 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SLC51BQ86UW2 128 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 C1QL4Q86Z23 238 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 LIX1LQ8IVB5 337 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 OR8H2Q8N162 312 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 FBXO39Q8N4B4 442 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CARNMT1Q8N4J0 409 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 ATPAF2Q8N5M1 289 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 PARP16Q8N5Y8 322 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 PTGR2Q8N8N7 351 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 ZBTB34Q8NCN2 500 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 OR9Q1Q8NGQ5 310 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 SLC2A14Q8TDB8 520 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CFHR4Q92496 578 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 FIG4Q92562 907 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RAB24Q969Q5 203 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 NT5C3BQ969T7 300 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 NACC2Q96BF6 587 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 PGAP3Q96FM1 320 aaPredicted RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 PPP3R2Q96LZ3 170 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 CEP295NLQ96MC4 621 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 GAD1Q99259 594 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 THUMPD3Q9BV44 507 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 FICDQ9BVA6 458 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RAB6CQ9H0N0 254 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 MFSD1Q9H3U5 465 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 NIPAL2Q9H841 368 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 NTN4Q9HB63 628 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms