RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 DOPEY2Q9Y3R5 2298 aa13.66□□□□□ -0.22
NIF3L1-205ENST00000409588 A0A087X1B8 175 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 TCRBV16S1A1N1A0A5B0 115 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 NCF1BA6NI72 391 aaPredicted RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 NCF1CA8MVU1 366 aaPredicted RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 TAPBPO15533 448 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 PHGDHO43175 533 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 B4GALT2O60909 372 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 LTA4HP09960 611 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 NCF1P14598 390 aaPredicted RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 SLC26A5P58743 744 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 RAB8AP61006 207 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 E2F2Q14209 437 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 SLBPQ14493 270 aaKnown RBP eCLIP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 FAM83EQ2M2I3 478 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 C4orf17Q53FE4 359 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 GLE1Q53GS7 698 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 XKR6Q5GH73 641 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 TOR1AIP1Q5JTV8 583 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 METTL2BQ6P1Q9 378 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 TRIM40Q6P9F5 258 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 ZDHHC24Q6UX98 284 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 LRRC70Q7Z2Q7 622 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 CNPY4Q8N129 248 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 MNS1Q8NEH6 495 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 OR2L5Q8NG80 312 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 ELP5Q8TE02 316 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 MS4A6EQ96DS6 147 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 UTP23Q9BRU9 249 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 REXO4Q9GZR2 422 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 NUDT4Q9NZJ9 180 aa13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 MTRF1LQ9UGC7 380 aaKnown RBP13.65□□□□□ -0.22
NIF3L1-205ENST00000409588 IGHV3-20A0A0C4DH32 117 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 ZNF860A6NHJ4 632 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 B3GALT2O43825 422 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 KERAO60938 352 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 CDC123O75794 336 aaPredicted RBP13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 PIAS1O75925 651 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 LDLRP01130 860 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 CELA2AP08217 269 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 SLC35E2BP0CK96 405 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 CD46P15529 392 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 HNF4AP41235 474 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 ARFIP1P53367 373 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 BTN3A2P78410 334 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 IRF8Q02556 426 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 BIKQ13323 160 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 EFTUD2Q15029 972 aaKnown RBP eCLIP13.64□□□□□ -0.232e-11■■■■■ 41.9
NIF3L1-205ENST00000409588 ACAP2Q15057 778 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 OR4D1Q15615 310 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 TMEM35AQ53FP2 167 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 CHSY3Q70JA7 882 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 RPS19BP1Q86WX3 136 aaKnown RBP13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 ZNF595Q8IYB9 648 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 CA13Q8N1Q1 262 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 ARMC10Q8N2F6 343 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 SPATA6LQ8N4H0 392 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 NR4A3Q92570 626 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 MAGEB10Q96LZ2 347 aaPredicted RBP13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 SERINC2Q96SA4 455 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 LRRC1Q9BTT6 524 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 KLHL31Q9H511 634 aa13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 PLEKHB1Q9UF11 243 aaPredicted RBP13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 ERRFI1Q9UJM3 462 aaPredicted RBP13.64□□□□□ -0.23
NIF3L1-205ENST00000409588 SCN3AQ9NY46 2000 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 IGKV3D-11A0A0A0MRZ8 115 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 OR2W5A6NFC9 320 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 KIF2AO00139 706 aaPredicted RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 ERI3O43414 337 aaKnown RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 URI1O94763 535 aaPredicted RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 STSP08842 583 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 EPB42P16452 691 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TFEBP19484 476 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 KCNC1P48547 511 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 HSPA7P48741 367 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 MTTPP55157 894 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 DOC2AQ14183 400 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 KRTCAP3Q53RY4 240 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 ZNF766Q5HY98 468 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 KLC3Q6P597 504 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 MMGT1Q8N4V1 131 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 SNX31Q8N9S9 440 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TMEM178AQ8NBL3 297 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 FAM98AQ8NCA5 519 aaKnown RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 CCT6BQ92526 530 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 KCNC2Q96PR1 638 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TMEM79Q9BSE2 394 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TBCDQ9BTW9 1192 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TRIM45Q9H8W5 580 aaPredicted RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 ZDHHC18Q9NUE0 388 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 ZNF490Q9ULM2 529 aaPredicted RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 PPIEQ9UNP9 301 aaKnown RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TSC22D4Q9Y3Q8 395 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 TNPO3Q9Y5L0 923 aaKnown RBP13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 POLEQ07864 2286 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 SCN2AQ99250 2005 aa13.63□□□□□ -0.23
NIF3L1-205ENST00000409588 SAGE2PA6NJ88 616 aa13.62□□□□□ -0.23
NIF3L1-205ENST00000409588 K7EPI3 171 aa13.62□□□□□ -0.23
NIF3L1-205ENST00000409588 FCHO1O14526 889 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms