RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SORBS1Q9BX66 1292 aaKnown RBP25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 OR6C2Q9NZP2 312 aa25.17■■□□□ 1.62
CCDC88C-205ENST00000553403 SPTBN5Q9NRC6 3674 aaKnown RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 PRAMEF33A0A0G2JMD5 474 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 RNF103-CHMP3A0A140T963 221 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 CHURC1-FNTBB4DL54 471 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 PRAMEF26H0Y7S4 382 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 LCMT2O60294 686 aaKnown RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 PRKD3O94806 890 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 SERPINA1P01009 418 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 CHRNB1P11230 501 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 EFNA1P20827 205 aaPredicted RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 CMPK1P30085 196 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 RABIFP47224 123 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 TXNL4AP83876 142 aaKnown RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 ALG11Q2TAA5 492 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 PTCRAQ6ISU1 281 aaPredicted RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 ZNF852Q6ZMS4 543 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 Q6ZS52 159 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 APLFQ8IW19 511 aaPredicted RBP25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 TBC1D19Q8N5T2 526 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 FAM86B1Q8N7N1 296 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 OR2L3Q8NG85 312 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 CREB3L4Q8TEY5 395 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 SARGQ9BW04 601 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 SLC6A20Q9NP91 592 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 DMTF1Q9Y222 760 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 TTC28Q96AY4 2481 aa25.16■■□□□ 1.62
CCDC88C-205ENST00000553403 RASGRP1O95267 797 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 EML2O95834 649 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 MT-ND1P03886 318 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 PEBP1P30086 187 aaKnown RBP25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 ACTR1BP42025 376 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 MAPK12P53778 367 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 ACTR1AP61163 376 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 GAB1Q13480 694 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 VEZF1Q14119 521 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 SMAD2Q15796 467 aaKnown RBP25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 ZIC1Q15915 447 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 NKG7Q16617 165 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 MPEG1Q2M385 716 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 TMEM35AQ53FP2 167 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 NHSL2Q5HYW2 709 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 Q6ZSR6 202 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 SYT13Q7L8C5 426 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 NUDT13Q86X67 352 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 PTOV1Q86YD1 416 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 SYNPOQ8N3V7 929 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 TRIML2Q8N7C3 387 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 FLCNQ8NFG4 579 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 TM4SF18Q96CE8 201 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 PYURFQ96I23 114 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 CNBD2Q96M20 576 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 TMEM168Q9H0V1 697 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 CHST8Q9H2A9 424 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 C6orf106Q9H6K1 298 aaPredicted RBP25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 UBAP1Q9NZ09 502 aa25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 SAMD4AQ9UPU9 718 aaKnown RBP25.15■■□□□ 1.62
CCDC88C-205ENST00000553403 A6NCN8 305 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 PDLIM1O00151 329 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 C6orf47O95873 294 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 C1QCP02747 245 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 IGHV4-34P06331 123 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 DDCP20711 480 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 AMIGO1Q86WK6 493 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 CHERPQ8IWX8 916 aaKnown RBP25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 FAM47BQ8NA70 645 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 LCN9Q8WX39 176 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 VPS50Q96JG6 964 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 NTN4Q9HB63 628 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 MIEF1Q9NQG6 463 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 ZNF624Q9P2J8 865 aaPredicted RBP25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 DNAJB9Q9UBS3 223 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 AP1M2Q9Y6Q5 423 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 DGKBQ9Y6T7 804 aa25.14■■□□□ 1.62
CCDC88C-205ENST00000553403 AHRP35869 848 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 NUDT1P36639 197 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 TRA2BP62995 288 aaKnown RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 HBA1P69905 142 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 LRRC32Q14392 662 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 RGNQ15493 299 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 ZNF764Q96H86 408 aaPredicted RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 DDX31Q9H8H2 851 aaKnown RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 LHX9Q9NQ69 397 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 SPHK1Q9NYA1 384 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 PNMA8BQ9ULN7 279 aaPredicted RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 UPK1AO00322 258 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 RTCAO00442 366 aaKnown RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 CHRM5P08912 532 aaPredicted RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 BCL6P41182 706 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 HEPACAMQ14CZ8 416 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 ADRM1Q16186 407 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 OR52E8Q6IFG1 317 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 UBE3DQ7Z6J8 389 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 ADGRF3Q8IZF5 1079 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 CCL4L1Q8NHW4 92 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 CIDECQ96AQ7 238 aaPredicted RBP25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 RPS6KA6Q9UK32 745 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 SNX7Q9UNH6 387 aa25.13■■□□□ 1.61
CCDC88C-205ENST00000553403 CYP8B1Q9UNU6 501 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms