RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HIST1H2AHQ96KK5 128 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 HIST1H2AJQ99878 128 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 TRIM51Q9BSJ1 452 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 H2AFJQ9BTM1 129 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 TRBC2A0A5B9 178 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 C19orf84I3L1E1 186 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 NDC80O14777 642 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 CHST10O43529 356 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 OR1F1O43749 312 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 TSPAN12O95859 305 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 ALOX12P18054 663 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 PGAM1P18669 254 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 JAK1P23458 1154 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 CRYMQ14894 314 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 DEFB134Q4QY38 66 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 RBM20Q5T481 1227 aaKnown RBP19.77■□□□□ 0.76
VPS53-216ENST00000574029 ZNF468Q5VIY5 522 aaPredicted RBP19.77■□□□□ 0.76
VPS53-216ENST00000574029 NIPAL1Q6NVV3 410 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 STRA8Q7Z7C7 330 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 CHERPQ8IWX8 916 aaKnown RBP19.77■□□□□ 0.76
VPS53-216ENST00000574029 PPIL6Q8IXY8 311 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 KIF2BQ8N4N8 673 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 NT5CQ8TCD5 201 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 PYCR2Q96C36 320 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 SNF8Q96H20 258 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 OR4K3Q96R72 315 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 TRIM45Q9H8W5 580 aaPredicted RBP19.77■□□□□ 0.76
VPS53-216ENST00000574029 CSMD2Q7Z408 3487 aa19.77■□□□□ 0.76
VPS53-216ENST00000574029 ZSCAN12O43309 604 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 NME2P1O60361 137 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 NME2P22392 152 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 TPP2P29144 1249 aaPredicted RBP19.76■□□□□ 0.75
VPS53-216ENST00000574029 SKP1P63208 163 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 OLR1P78380 273 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 ZNF227Q86WZ6 799 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 CNTN4Q8IWV2 1026 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 GHDCQ8N2G8 530 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 GABPB2Q8TAK5 448 aaPredicted RBP19.76■□□□□ 0.75
VPS53-216ENST00000574029 PBKQ96KB5 322 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 OLFM1Q99784 485 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 GPAMQ9HCL2 828 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 ARL15Q9NXU5 204 aa19.76■□□□□ 0.75
VPS53-216ENST00000574029 SLC25A12O75746 678 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 B3GALT4O96024 378 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 AHSGP02765 367 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 ZNF888P0CJ79 500 aaPredicted RBP19.75■□□□□ 0.75
VPS53-216ENST00000574029 ABOP16442 354 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 AP1S2P56377 157 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 MAPKAPK3Q16644 382 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 RNFT1Q5M7Z0 435 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 CATSPEREQ5SY80 951 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 RNASEH2BQ5TBB1 312 aaKnown RBP19.75■□□□□ 0.75
VPS53-216ENST00000574029 QSOX2Q6ZRP7 698 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 KIAA0408Q6ZU52 694 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 PHF10Q8WUB8 498 aaKnown RBP19.75■□□□□ 0.75
VPS53-216ENST00000574029 PTCHD1Q96NR3 888 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 SPNS1Q9H2V7 528 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 CLK4Q9HAZ1 481 aaKnown RBP19.75■□□□□ 0.75
VPS53-216ENST00000574029 ZFP69BQ9UJL9 534 aa19.75■□□□□ 0.75
VPS53-216ENST00000574029 PCNX1Q96RV3 2341 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 B4GALT2O60909 372 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 TTC4O95801 387 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 AHRP35869 848 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 KIR3DL1P43629 444 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 SCTRP47872 440 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 CYB561P49447 251 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 MLF1P58340 268 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 IL2P60568 153 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 HSF1Q00613 529 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 RGS1Q08116 209 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 SPANXN3Q5MJ09 141 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 NCCRP1Q6ZVX7 275 aaPredicted RBP19.74■□□□□ 0.75
VPS53-216ENST00000574029 ABHD13Q7L211 337 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 GALNT7Q86SF2 657 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 DOLPP1Q86YN1 238 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 ARMC10Q8N2F6 343 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 TBC1D19Q8N5T2 526 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 UTP15Q8TED0 518 aaKnown RBP19.74■□□□□ 0.75
VPS53-216ENST00000574029 AGAP11Q8TF27 550 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 FBXL8Q96CD0 374 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 TRIM54Q9BYV2 358 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 JRKLQ9Y4A0 524 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 ASB1Q9Y576 335 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 PKDREJQ9NTG1 2253 aa19.74■□□□□ 0.75
VPS53-216ENST00000574029 GTF3C1Q12789 2109 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 SAGE2PA6NJ88 616 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 E9PLN8 166 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 ZNHIT1O43257 154 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 PRMT3O60678 531 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 SERPIND1P05546 499 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 ZNF24P17028 368 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 SSTR2P30874 369 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 TRHRP34981 398 aaPredicted RBP19.73■□□□□ 0.75
VPS53-216ENST00000574029 BTG2P78543 158 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 CSHL1Q14406 222 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 FGD2Q7Z6J4 655 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 CYP4X1Q8N118 509 aa19.73■□□□□ 0.75
VPS53-216ENST00000574029 CPSF7Q8N684 471 aaKnown RBP19.73■□□□□ 0.75
VPS53-216ENST00000574029 NFAM1Q8NET5 270 aaPredicted RBP19.73■□□□□ 0.75
VPS53-216ENST00000574029 GRK7Q8WTQ7 553 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms