RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ART5Q96L15 291 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 Q9N2J8 555 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PRSS38A1L453 326 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ARHGEF33A8MVX0 844 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CDC123O75794 336 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ACADVLP49748 655 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 HTR6P50406 440 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 LRP8Q14114 963 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ADGRE1Q14246 886 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 GANABQ14697 944 aaKnown RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PUS10Q3MIT2 529 aaKnown RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 TIMM50Q3ZCQ8 353 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 C6orf52Q5T4I8 152 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 NEK10Q6ZWH5 1172 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PLXDC1Q8IUK5 500 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 HCAR2Q8TDS4 363 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CLK4Q9HAZ1 481 aaKnown RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PRTFDC1Q9NRG1 225 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM184CQ9NVA4 438 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 KLHL42Q9P2K6 505 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CA5BQ9Y2D0 317 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 COL11A1P12107 1806 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 LOC100506127A0A0U1RQW1 187 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 NUAK1O60285 661 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 DHRS4L1P0CG22 281 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 MATN1P21941 496 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 AOAHP28039 575 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 GCAP28676 217 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PDHA2P29803 388 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 HTRA4P83105 476 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 LETMD1Q6P1Q0 360 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF765Q7L2R6 523 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 RNF130Q86XS8 419 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 RASGEF1AQ8N9B8 481 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PKMYT1Q99640 499 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CCDC106Q9BWC9 280 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PHF7Q9BWX1 381 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 STRADBQ9C0K7 418 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 GSTO2Q9H4Y5 243 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 RDH14Q9HBH5 336 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ZSCAN32Q9NX65 697 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 SCN1AP35498 2009 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 DOCK3Q8IZD9 2030 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 LINC01565O15544 149 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 OR2B3O76000 313 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PENKP01210 267 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 EIF2DP41214 584 aaKnown RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CLCN7P51798 805 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 XKP51811 444 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 OC90Q02509 493 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CATSPEREQ5SY80 951 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 LYSMD4Q5XG99 296 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ADGRG6Q86SQ4 1221 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 SMYD1Q8NB12 490 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 DDHD1Q8NEL9 900 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 SLITRK2Q9H156 845 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 CCNB1IP1Q9NPC3 277 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 TOR4AQ9NXH8 423 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 ACTR3BQ9P1U1 418 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 SIT1Q9Y3P8 196 aa7.13□□□□□ -1.27
SYNE1-213ENST00000448038 PROS1P07225 676 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 F5P12259 2224 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MAOBP27338 520 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TALDO1P37837 337 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF267Q14586 743 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM35AQ53FP2 167 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF311Q5JNZ3 666 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 GRHL2Q6ISB3 625 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 RGPD4Q7Z3J3 1758 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 DEFB123Q8N688 67 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF527Q8NB42 609 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR7A2PQ8NGA2 310 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MSANTD3Q96H12 275 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TAPBPLQ9BX59 468 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 OR8D2Q9GZM6 311 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 GSTK1Q9Y2Q3 226 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 EFCAB10A6NFE3 127 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 FAM25AB3EWG3 89 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 FAM25CB3EWG5 89 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 FAM25GB3EWG6 89 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 XKRYO14609 159 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 GNB5O14775 395 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 HTRA2O43464 458 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MGRN1O60291 552 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 CREG1O75629 220 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 CD38P28907 300 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 TTKP33981 857 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 MMP12P39900 470 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 CSTF1Q05048 431 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 NFATC4Q14934 902 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF630Q2M218 657 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 DEFB133Q30KQ1 61 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 KIAA0895LQ68EN5 471 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 THAP5Q7Z6K1 395 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 KDM1BQ8NB78 822 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 GEMIN6Q8WXD5 167 aaKnown RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 AURKBQ96GD4 344 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-213ENST00000448038 PTCHD1Q96NR3 888 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 HDAC8Q9BY41 377 aa7.12□□□□□ -1.27
SYNE1-213ENST00000448038 COQ10BQ9H8M1 238 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms