RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LIPEQ05469 1076 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 LRRC74AQ0VAA2 488 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 MAPKAPK3Q16644 382 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 FAM174BQ3ZCQ3 159 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 CWF19L1Q69YN2 538 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 KLHL35Q6PF15 583 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 FKBP9P1Q75LS8 142 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TMEFF1Q8IYR6 380 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 METTL4Q8N3J2 472 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 OR8J3Q8NGG0 315 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 CANT1Q8WVQ1 401 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 VPS33AQ96AX1 596 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PPWD1Q96BP3 646 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 CENPNQ96H22 339 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TSSK3Q96PN8 268 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 C9orf16Q9BUW7 83 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 COQ10BQ9H8M1 238 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PRMT8Q9NR22 394 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 KLF15Q9UIH9 416 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 MAGEL2Q9UJ55 1249 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 C2orf74A8MZ97 194 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 KCNH1O95259 989 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 TGFB1P01137 390 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 HOXB6P17509 224 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 BCKDHBP21953 392 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 IL12AP29459 219 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 AHRP35869 848 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 RPL5P46777 297 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 ARFIP1P53367 373 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 BIRC2Q13490 618 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 PWP1Q13610 501 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 GPR18Q14330 331 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 CAPRIN1Q14444 709 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 TMEM35AQ53FP2 167 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 KHDRBS2Q5VWX1 349 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 ARMC6Q6NXE6 501 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 ZBTB49Q6ZSB9 765 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 R3HCC1LQ7Z5L2 792 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 CHERPQ8IWX8 916 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 ADGRG5Q8IZF4 528 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 GALNT4Q8N4A0 578 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 GPR156Q8NFN8 814 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 TNIP2Q8NFZ5 429 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 SLC37A2Q8TED4 501 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 SH3GL1Q99961 368 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 SARGQ9BW04 601 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 AGPAT4Q9NRZ5 378 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 SUSD2Q9UGT4 822 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 PCDHB3Q9Y5E6 796 aa17.42■□□□□ 0.38
CCDC88C-203ENST00000389856 TRBV23OR9-2A0A075B6M9 112 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ARHGAP10A1A4S6 786 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 C9JVG2 144 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ZW10O43264 779 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 AKAP10O43572 662 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 MAOBP27338 520 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ZNF763Q0D2J5 394 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 PAGE3Q5JUK9 113 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 DEPDC1Q5TB30 811 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 NANOGP8Q6NSW7 305 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 HMBOX1Q6NT76 420 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 IKBIPQ70UQ0 350 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 COMMD6Q7Z4G1 85 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ADGRF3Q8IZF5 1079 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 RNF175Q8N4F7 328 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ZNF740Q8NDX6 193 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 VPS37AQ8NEZ2 397 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 LMX1AQ8TE12 382 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 C11orf24Q96F05 449 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ITCHQ96J02 903 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 OR52E6Q96RD3 313 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 DPH7Q9BTV6 452 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 EBPLQ9BY08 206 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 MS4A8Q9BY19 250 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 SPNS1Q9H2V7 528 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 NANOGQ9H9S0 305 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 EYSQ5T1H1 3165 aa17.41■□□□□ 0.38
CCDC88C-203ENST00000389856 ETHE1O95571 254 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 KIR3DL1P43629 444 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 RPS15AP62244 130 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 HHEXQ03014 270 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 TGM3Q08188 693 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 C1orf61Q13536 156 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 SLC5A12Q1EHB4 618 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 FOXB2Q5VYV0 432 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 LYSMD4Q5XG99 296 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 TMEM26Q6ZUK4 368 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 GPR180Q86V85 440 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 OOSP2Q86WS3 158 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 SPPL2CQ8IUH8 684 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 KIAA2013Q8IYS2 634 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 NAGSQ8N159 534 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 SRFBP1Q8NEF9 429 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 CLHC1Q8NHS4 586 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 C1orf216Q8TAB5 229 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 ZFAND2BQ8WV99 257 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 NCSTNQ92542 709 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 RGMAQ96B86 450 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 OR51B5Q9H339 312 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 ERVMER34-1Q9H9K5 563 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms