RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 IBSPP21815 317 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 RARSP54136 660 aaKnown RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 ST5P78524 1137 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 MAP7D2Q96T17 732 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 KIF21AQ7Z4S6 1674 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 TTLL12Q14166 644 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 JAKMIP3Q5VZ66 844 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 NGLY1Q96IV0 654 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 PHAXQ9H814 394 aaKnown RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 SLC12A7Q9Y666 1083 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 MSH6P52701 1360 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 PIK3R4Q99570 1358 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 KIAA1328Q86T90 577 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 ANKRD24Q8TF21 1146 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 CCDC8Q9H0W5 538 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 F6X3S4 739 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 NEFHP12036 1026 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 AXDND1Q5T1B0 1012 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 ZNF219Q9P2Y4 722 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 DMRT2Q9Y5R5 561 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 PPIP5K1Q6PFW1 1433 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 TEX13AQ9BXU3 409 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 CWC25Q9NXE8 425 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 ZNF213O14771 459 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 RANBP6O60518 1105 aaKnown RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 TTF1Q15361 905 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 SCLT1Q96NL6 688 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 ASXL1Q8IXJ9 1541 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 ZRSR2Q15696 482 aaKnown RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 GRPEL1Q9HAV7 217 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 CIZ1Q9ULV3 898 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 EIF5P55010 431 aaKnown RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 SSH1Q8WYL5 1049 aa10.17□□□□□ -0.78
PTCD3-201ENST00000254630 DBF4Q9UBU7 674 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-201ENST00000254630 PPP1R12BO60237 982 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-201ENST00000254630 POTEJP0CG39 1038 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 GPTP24298 496 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 CAMK4Q16566 473 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 IFNL2Q8IZJ0 200 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 RALGAPBQ86X10 1494 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 FOXO3O43524 673 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 MTERF4Q7Z6M4 381 aaKnown RBP10.16□□□□□ -0.78
PTCD3-201ENST00000254630 RPRD2Q5VT52 1461 aaKnown RBP10.16□□□□□ -0.78
PTCD3-201ENST00000254630 KIAA0556O60303 1618 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 CCDC196A0A1B0GTZ2 297 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 GOLGA8AA7E2F4 631 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 GOLGA8BA8MQT2 603 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 MAP3K11Q16584 847 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 FAM177A1Q8N128 213 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-201ENST00000254630 RNF41Q9H4P4 317 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-201ENST00000254630 PPP1R42Q7Z4L9 355 aa10.16□□□□□ -0.78
PTCD3-201ENST00000254630 GBP2P32456 591 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 TMEM266Q2M3C6 531 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 CTCFLQ8NI51 663 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 EVI5LQ96CN4 794 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 ACEP12821 1306 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 LEKR1Q6ZMV7 388 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 ZBTB3Q9H5J0 574 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 SSR1P43307 286 aaKnown RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 CATIPQ7Z7H3 387 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 VSIG10Q8N0Z9 540 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 C14orf93Q9H972 538 aaKnown RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 SH2B1Q9NRF2 756 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 ANKRD62A6NC57 917 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 ENOX2Q16206 610 aaKnown RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 CDC5LQ99459 802 aaKnown RBP10.15□□□□□ -0.78
PTCD3-201ENST00000254630 ADAMTS12P58397 1594 aa10.15□□□□□ -0.78
PTCD3-201ENST00000254630 IDI1Q13907 227 aa10.15□□□□□ -0.79
PTCD3-201ENST00000254630 ASXL2Q76L83 1435 aa10.15□□□□□ -0.79
PTCD3-201ENST00000254630 EPB41L2O43491 1005 aaKnown RBP10.15□□□□□ -0.79
PTCD3-201ENST00000254630 IQCA1Q86XH1 822 aa10.15□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC191Q8NCU4 936 aa10.15□□□□□ -0.79
PTCD3-201ENST00000254630 TAF4BQ92750 862 aa10.15□□□□□ -0.79
PTCD3-201ENST00000254630 H0YHG0 523 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 RFC4P35249 363 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 CHMP4BP1P59074 171 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 DDX46Q7L014 1031 aaKnown RBP10.14□□□□□ -0.79
PTCD3-201ENST00000254630 C8orf76Q96K31 380 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 ABCC1P33527 1531 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 WDR7Q9Y4E6 1490 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 RIMS2Q9UQ26 1411 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 NLRP5P59047 1200 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC148Q8NFR7 591 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 WDHD1O75717 1129 aaPredicted RBP10.14□□□□□ -0.79
PTCD3-201ENST00000254630 GPATCH8Q9UKJ3 1502 aaKnown RBP10.14□□□□□ -0.79
PTCD3-201ENST00000254630 ZNF518AQ6AHZ1 1483 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 ERLIN1O75477 346 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 GSTO1P78417 241 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 FLIIQ13045 1269 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 FKBP15Q5T1M5 1219 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC150Q8NCX0 1101 aa10.14□□□□□ -0.79
PTCD3-201ENST00000254630 UBA5Q9GZZ9 404 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 A2MP01023 1474 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 IFIT3O14879 490 aaKnown RBP10.13□□□□□ -0.79
PTCD3-201ENST00000254630 BAG4O95429 457 aaKnown RBP10.13□□□□□ -0.79
PTCD3-201ENST00000254630 SPTY2D1Q68D10 685 aaPredicted RBP10.13□□□□□ -0.79
PTCD3-201ENST00000254630 MBIPQ9NS73 344 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 FAM193AP78312 1265 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 CCDC112Q8NEF3 446 aa10.13□□□□□ -0.79
PTCD3-201ENST00000254630 HMGN5P82970 282 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms