RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 C8orf89P0DMQ9 161 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 NCF1P14598 390 aaPredicted RBP19.18■□□□□ 0.66
CLK3-225ENST00000569063 IL10P22301 178 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 PCOLCEQ15113 449 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 SULT1C3Q6IMI6 304 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 NIPAL1Q6NVV3 410 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 SLCO4C1Q6ZQN7 724 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 RELL1Q8IUW5 271 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 TRPV3Q8NET8 790 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 METTL21AQ8WXB1 218 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 KIAA1191Q96A73 305 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 LMF1Q96S06 567 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 CYTH2Q99418 400 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 CAPS2Q9BXY5 557 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 RIC8BQ9NVN3 520 aa19.18■□□□□ 0.66
CLK3-225ENST00000569063 MYO18BQ8IUG5 2567 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 TAPBPO15533 448 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 VPS4BO75351 444 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 SERPINA7P05543 415 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 SERPIND1P05546 499 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 PRR35P0CG20 571 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 SLC35E2BP0CK96 405 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 C1GALT1C1LP0DN25 315 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 ALOX12P18054 663 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 CRABP2P29373 138 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 SKP1P63208 163 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 EEF1A2Q05639 463 aaKnown RBP19.17■□□□□ 0.66
CLK3-225ENST00000569063 EFTUD2Q15029 972 aaKnown RBP eCLIP19.17■□□□□ 0.667e-7■■■■□ 22
CLK3-225ENST00000569063 ISLR2Q6UXK2 745 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 CEP128Q6ZU80 1094 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 ABHD13Q7L211 337 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 IQCKQ8N0W5 287 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 PDPRQ8NCN5 879 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 GALNT11Q8NCW6 608 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 MNS1Q8NEH6 495 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 PPP4R1Q8TF05 950 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 PSMF1Q92530 271 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 OR1F2PQ96R84 312 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 WDR77Q9BQA1 342 aaPredicted RBP19.17■□□□□ 0.66
CLK3-225ENST00000569063 TMEM79Q9BSE2 394 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 SLC6A16Q9GZN6 736 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 ILKAPQ9H0C8 392 aaPredicted RBP19.17■□□□□ 0.66
CLK3-225ENST00000569063 CNOT10Q9H9A5 744 aaKnown RBP19.17■□□□□ 0.66
CLK3-225ENST00000569063 GPRC5BQ9NZH0 403 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 VPS4AQ9UN37 437 aa19.17■□□□□ 0.66
CLK3-225ENST00000569063 CTAGE15A4D2H0 777 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 URADA6NGE7 173 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 H2AFYO75367 372 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 ZNF888P0CJ79 500 aaPredicted RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 ICAM2P13598 275 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 HYAL2Q12891 473 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 CDC16Q13042 620 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 MFAP5Q13361 173 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 SLMAPQ14BN4 828 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 RBBP5Q15291 538 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 MINDY4Q4G0A6 757 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 DEFB134Q4QY38 66 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 PRR30Q53SZ7 412 aaPredicted RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 CRB2Q5IJ48 1285 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 RIPOR1Q6ZS17 1223 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 RAPH1Q70E73 1250 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 CMC1Q7Z7K0 106 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 CTAGE6Q86UF2 777 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 NOA1Q8NC60 698 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 UTP15Q8TED0 518 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 CREB3L4Q8TEY5 395 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 IMMP1LQ96LU5 166 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 TUBB6Q9BUF5 446 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 EPS8L2Q9H6S3 715 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 CLK4Q9HAZ1 481 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 WWOXQ9NZC7 414 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 COPG2Q9UBF2 871 aa19.16■□□□□ 0.66
CLK3-225ENST00000569063 MTRF1LQ9UGC7 380 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 DMGDHQ9UI17 866 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 PTBP2Q9UKA9 531 aaKnown RBP19.16■□□□□ 0.66
CLK3-225ENST00000569063 CLEC18AA5D8T8 446 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 KIF2AO00139 706 aaPredicted RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 SERPINA6P08185 405 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 SMIM10L1P0DMW3 83 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 KCNC1P48547 511 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 AP2B1P63010 937 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 GLE1Q53GS7 698 aaKnown RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 MFSD4BQ5TF39 518 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CLEC18BQ6UXF7 455 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CPEB2Q7Z5Q1 589 aaKnown RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 ISCA2Q86U28 154 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CUZD1Q86UP6 607 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CLEC18CQ8NCF0 446 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 TTLQ8NG68 377 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 OR5T3Q8NGG3 340 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 STAG3L4Q8TBR4 150 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 SNRNP40Q96DI7 357 aaKnown RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 PEX11GQ96HA9 241 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 SMIM10Q96HG1 83 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 SEC16BQ96JE7 1060 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 PITHD1Q9GZP4 211 aaPredicted RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 TSPYL1Q9H0U9 437 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 EHD1Q9H4M9 534 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 NT5DC2Q9H857 520 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 NMRAL1Q9HBL8 299 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms