RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	GCGR	P47871	477 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	ABCE1	P61221	599 aa	Known RBP	13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	ZNF33B	Q06732	778 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	FAM53B	Q14153	422 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	PRAMEF17	Q5VTA0	474 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	RHBDD2	Q6NTF9	364 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	TMEM214	Q6NUQ4	689 aa	Known RBP	13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	KIRREL3	Q8IZU9	778 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	HUS1B	Q8NHY5	278 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	WDR20	Q8TBZ3	569 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	PROKR1	Q8TCW9	393 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	MVB12A	Q96EY5	273 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	CMTM7	Q96FZ5	175 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	SLC6A16	Q9GZN6	736 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	MANSC1	Q9H8J5	431 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	ACSL6	Q9UKU0	697 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	PPT2	Q9UMR5	302 aa		13.61	□□□□□ -0.23
CHD8-208	ENST00000555301	TMEM184B	Q9Y519	407 aa	Predicted RBP	13.61	□□□□□ -0.23
CHD8-208	ENST00000555301		A0A1B0GX78	115 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	MED19	A0JLT2	244 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	STMND1	H3BQB6	276 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	FFAR3	O14843	346 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	KLF11	O14901	512 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	AZIN1	O14977	448 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	GPR42	O15529	346 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	ULK1	O75385	1050 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	NTRK1	P04629	796 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	FGF4	P08620	206 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	PTX3	P26022	381 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SLC1A6	P48664	564 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SKP1	P63208	163 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	BST1	Q10588	318 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	DDX39B	Q13838	428 aa	Known RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	MAP7	Q14244	749 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	ADPRM	Q3LIE5	342 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	TBC1D25	Q3MII6	688 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	NIPAL1	Q6NVV3	410 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	PRMT9	Q6P2P2	845 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	TTLL10	Q6ZVT0	673 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	CHSY3	Q70JA7	882 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	ABHD13	Q7L211	337 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	VN1R5	Q7Z5H4	357 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	CLYBL	Q8N0X4	340 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	ARHGEF39	Q8N4T4	335 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	KCT2	Q8NC54	265 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SRFBP1	Q8NEF9	429 aa	Known RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SELENOM	Q8WWX9	145 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	MTERF1	Q99551	399 aa	Known RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	MACROD1	Q9BQ69	325 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	CENPK	Q9BS16	269 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SHCBP1L	Q9BZQ2	653 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SPRY4	Q9C004	299 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	REXO4	Q9GZR2	422 aa	Known RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	DMRT3	Q9NQL9	472 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	THAP1	Q9NVV9	213 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	CDC14A	Q9UNH5	594 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	SLC22A7	Q9Y694	548 aa		13.6	□□□□□ -0.23
CHD8-208	ENST00000555301	LRIT2	A6NDA9	550 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	MANBA	O00462	879 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	DSCR3	O14972	297 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	DLGAP3	O95886	979 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	CHEK2	O96017	543 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	STATH	P02808	62 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	KLK3	P07288	261 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	CCNYL3	P0C7X3	344 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	HSD3B1	P14060	373 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ZNF28	P17035	718 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ALAS2	P22557	587 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	HSD3B2	P26439	372 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ATP1A2	P50993	1020 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	NEK2	P51955	445 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	TGM3	Q08188	693 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	HYAL2	Q12891	473 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	HERC3	Q15034	1050 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	TMEM35A	Q53FP2	167 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	TOR1AIP1	Q5JTV8	583 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	SH2D4B	Q5SQS7	431 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ADNP2	Q6IQ32	1131 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	C6orf15	Q6UXA7	325 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ESX1	Q8N693	406 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	GBP7	Q8N8V2	638 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	SLC38A9	Q8NBW4	561 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	LRRC8C	Q8TDW0	803 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ZNF75CP	Q92670	426 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	GAL3ST3	Q96A11	431 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	MTFMT	Q96DP5	389 aa	Known RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	C10orf90	Q96M02	699 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	KCNA7	Q96RP8	456 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	DPH2	Q9BQC3	489 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	MS4A8	Q9BY19	250 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ILKAP	Q9H0C8	392 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	BRF2	Q9HAW0	419 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	ANKH	Q9HCJ1	492 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	NMRK1	Q9NWW6	199 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	DHCR7	Q9UBM7	475 aa	Known RBP	13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	DKK4	Q9UBT3	224 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	NDOR1	Q9UHB4	597 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	RAP2C	Q9Y3L5	183 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms