RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 RBBP7Q16576 425 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SYT16Q17RD7 645 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SLC5A12Q1EHB4 618 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SH2D4BQ5SQS7 431 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 WASHC2DQ5SRD0 308 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 TMIGD1Q6UXZ0 262 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZNF793Q6ZN11 406 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 LRRC70Q7Z2Q7 622 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 TIPARPQ7Z3E1 657 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 MCATQ8IVS2 390 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 MMP21Q8N119 569 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 OR5T3Q8NGG3 340 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RFWD2Q8NHY2 731 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ATL1Q8WXF7 558 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZDHHC12Q96GR4 267 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 MRPL1Q9BYD6 325 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZNF768Q9H5H4 540 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 ACTR8Q9H981 624 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SLC22A11Q9NSA0 550 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FGF21Q9NSA1 209 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FOXJ2Q9P0K8 574 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 CLCA2Q9UQC9 943 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RUVBL1Q9Y265 456 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 TRAF6Q9Y4K3 522 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 PCDHGA4Q9Y5G9 962 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 NUP214P35658 2090 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 A0A1W2PS29 197 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FAM221BA6H8Z2 402 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 LRIT2A6NDA9 550 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FOXS1O43638 330 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 CLDN9O95484 217 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZBTB11O95625 1053 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 SERPINE1P05121 402 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 GCGRP47871 477 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SCTRP47872 440 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 DUSP3P51452 185 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 CCNG1P51959 295 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RAB8AP61006 207 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RPS13P62277 151 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 HSD11B2P80365 405 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FOXM1Q08050 763 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SRSF6Q13247 344 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 STX3Q13277 289 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 TGIF1Q15583 401 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 PRSS53Q2L4Q9 553 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SLC9B1Q4ZJI4 515 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RFTN2Q52LD8 501 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 TMEM198Q66K66 360 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 GPRIN3Q6ZVF9 776 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 RAB44Q7Z6P3 723 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 SLC22A9Q8IVM8 553 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 LAS2Q8IYD9 372 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 LRRC34Q8IZ02 419 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZNF655Q8N720 491 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 OR6C4Q8NGE1 309 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 METTL6Q8TCB7 284 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZNF473Q8WTR7 871 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZUFSPQ96AP4 578 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 CNDP1Q96KN2 507 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 EGLN2Q96KS0 407 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 C10orf90Q96M02 699 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 TEFMQ96QE5 360 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 ZNF382Q96SR6 550 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 ACPTQ9BZG2 426 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 FGFR1OP2Q9NVK5 253 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 NKIRAS1Q9NYS0 192 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 AKAP7Q9P0M2 348 aaPredicted RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 ADAM21Q9UKJ8 722 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 SATB2Q9UPW6 733 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 PCDHGA1Q9Y5H4 931 aa3.84□□□□□ -1.79
LIG4-201ENST00000356922 TNPO3Q9Y5L0 923 aaKnown RBP3.84□□□□□ -1.79
LIG4-201ENST00000356922 CNTRLQ7Z7A1 2325 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 GOLGA8QA0A0J9YX86 632 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 GOLGA8OA6NCC3 632 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 ZNF860A6NHJ4 632 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 EFCAB7A8K855 629 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 TMEM150CB9EJG8 249 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 GOLGA8NF8WBI6 632 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 PIP5K1BO14986 540 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 CNOT3O75175 753 aaKnown RBP3.84□□□□□ -1.8
LIG4-201ENST00000356922 EEDO75530 441 aaKnown RBP3.84□□□□□ -1.8
LIG4-201ENST00000356922 SKAP2O75563 359 aaPredicted RBP3.84□□□□□ -1.8
LIG4-201ENST00000356922 JRKO75564 520 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 PRKRAO75569 313 aaKnown RBP3.84□□□□□ -1.8
LIG4-201ENST00000356922 SERPIND1P05546 499 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 FGF4P08620 206 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 JUPP14923 745 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 TACR1P25103 407 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 EPHA3P29320 983 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 CMPK1P30085 196 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 HSD17B2P37059 387 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 CCR8P51685 355 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 PLA2G16P53816 162 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 OLR1P78380 273 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 MAT1AQ00266 395 aaKnown RBP3.84□□□□□ -1.8
LIG4-201ENST00000356922 BTKQ06187 659 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 SLC9A5Q14940 896 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 KIAA0040Q15053 153 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 TBCCQ15814 346 aa3.84□□□□□ -1.8
LIG4-201ENST00000356922 C3orf38Q5JPI3 329 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms