RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 H0YIG0 161 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 SGK494L7N484 410 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 BMP10O95393 424 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 NSA2O95478 260 aaKnown RBP17.41■□□□□ 0.38
CLN3-202ENST00000355477 ALPPP05187 535 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 HEXBP07686 556 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 CCDC166P0CW27 439 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 GMPRP36959 345 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 GP5P40197 560 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 CDKL1Q00532 357 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 GUCY2DQ02846 1103 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 CKAP4Q07065 602 aaKnown RBP17.41■□□□□ 0.38
CLN3-202ENST00000355477 CSHL1Q14406 222 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 KBTBD12Q3ZCT8 623 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 PRR30Q53SZ7 412 aaPredicted RBP17.41■□□□□ 0.38
CLN3-202ENST00000355477 CTAGE6Q86UF2 777 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 PDSS2Q86YH6 399 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 CTAGE3PQ8IX95 158 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 AMER2Q8N7J2 671 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 CPT1CQ8TCG5 803 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 FBF1Q8TES7 1133 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 PNPLA2Q96AD5 504 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 DERL2Q9GZP9 239 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 ZNF160Q9HCG1 818 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 ZDHHC18Q9NUE0 388 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 TXNDC16Q9P2K2 825 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 MKL2Q9ULH7 1088 aa17.41■□□□□ 0.38
CLN3-202ENST00000355477 TRBC2A0A5B9 178 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 MAP2K7O14733 419 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 KLHL41O60662 606 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 HPP00738 406 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 COX6A1P12074 109 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 GDF5P43026 501 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 ILF2Q12905 390 aaKnown RBP17.4■□□□□ 0.38
CLN3-202ENST00000355477 C8orf74Q6P047 294 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 NDUFAF7Q7L592 441 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 ADAMTSL2Q86TH1 951 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 PPM1NQ8N819 430 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 OR51Q1Q8NH59 317 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 RHBDF1Q96CC6 855 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 THOC3Q96J01 351 aaKnown RBP17.4■□□□□ 0.38
CLN3-202ENST00000355477 EGFL8Q99944 293 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 FAM129AQ9BZQ8 928 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 LHPPQ9H008 270 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 SLAMF7Q9NQ25 335 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 HCN3Q9P1Z3 774 aa17.4■□□□□ 0.38
CLN3-202ENST00000355477 CPAMD8Q8IZJ3 1885 aa17.39■□□□□ 0.38
CLN3-202ENST00000355477 OR2W5A6NFC9 320 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 NCF1BA6NI72 391 aaPredicted RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 NCF1CA8MVU1 366 aaPredicted RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 IPO13O94829 963 aaKnown RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 NCF1P14598 390 aaPredicted RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 STMN1P16949 149 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 HNMTP50135 292 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 EEF1A2Q05639 463 aaKnown RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 EFTUD2Q15029 972 aaKnown RBP eCLIP17.39■□□□□ 0.373e-6■■■■□ 22
CLN3-202ENST00000355477 INPP5JQ15735 1006 aaPredicted RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 ZKSCAN8Q15776 578 aaPredicted RBP17.39■□□□□ 0.37
CLN3-202ENST00000355477 WHAMMP3Q1A5X7 153 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 GRTP1Q5TC63 336 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 AGAP7PQ5VUJ5 663 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 TMEM205Q6UW68 189 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 NXPE4Q6UWF7 544 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 FRA10AC1Q70Z53 315 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 AFAP1L2Q8N4X5 818 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 ANKRD53Q8N9V6 530 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 ZNF592Q92610 1267 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 TSPAN17Q96FV3 270 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 VPS50Q96JG6 964 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 UBXN10Q96LJ8 280 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 AGAP4Q96P64 663 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 ANKHQ9HCJ1 492 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 B3GNT3Q9Y2A9 372 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 NAALAD2Q9Y3Q0 740 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 DYRK1BQ9Y463 629 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 CSAG2Q9Y5P2 127 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 SLC22A7Q9Y694 548 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 HIVEP3Q5T1R4 2406 aa17.39■□□□□ 0.37
CLN3-202ENST00000355477 USP9YO00507 2555 aaPredicted RBP17.38■□□□□ 0.37
CLN3-202ENST00000355477 LOC102723996A0A087X1L8 192 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 IGHV1-45A0A0A0MS14 117 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 A0A1W2PQ72 361 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 TAPBPO15533 448 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 NDUFS4O43181 175 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 DNAJB6O75190 326 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 RDH16O75452 317 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 KLHL18O94889 574 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 B3GALT4O96024 378 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SERPIND1P05546 499 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SLC35G6P0C7Q6 338 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 CD1DP15813 335 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 CXCR2P25025 360 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SPRP35270 261 aaPredicted RBP17.38■□□□□ 0.37
CLN3-202ENST00000355477 XCR1P46094 333 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SCTRP47872 440 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SLC6A12P48065 614 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 RAB10P61026 200 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 REEP5Q00765 189 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 PWP1Q13610 501 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 TGFBIQ15582 683 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms