RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GIMD1P0DJR0 217 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF8P17098 575 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 SLC15A1P46059 708 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ARFIP1P53367 373 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 RPS3AP61247 264 aaKnown RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 RPS13P62277 151 aaKnown RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 GPR68Q15743 365 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 C22orf39Q6P5X5 142 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 SUSD1Q6UWL2 747 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ATCAYQ86WG3 371 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 GHDCQ8N2G8 530 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 AQP11Q8NBQ7 271 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 WFIKKN2Q8TEU8 576 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 SMPDL3AQ92484 453 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 CARS2Q9HA77 564 aaKnown RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 POPDC3Q9HBV1 291 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 DLGAP4Q9Y2H0 992 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 UPK3BL1B0FP48 263 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 UPK3BL2E5RIL1 263 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 LINGO3P0C6S8 592 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 PSKH1P11801 424 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 SLC6A4P31645 630 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 OR2B6P58173 313 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ARF5P84085 180 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 NIPAL4Q0D2K0 466 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ADNP2Q6IQ32 1131 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 MAPK15Q8TD08 544 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 SYT11Q9BT88 431 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 DSN1Q9H410 356 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 TDP1Q9NUW8 608 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 MEIS3P2A8K0S8 358 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TLX2O43763 284 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 CH25HO95992 272 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 HMGN1P05114 100 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SRPRAP08240 638 aaKnown RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 DDX6P26196 483 aaKnown RBP eCLIP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 HOXA11P31270 313 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 GRK6P43250 576 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 NFATC2Q13469 925 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM44Q2T9K0 475 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 KIAA1614Q5VZ46 1190 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SLC8B1Q6J4K2 584 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 B3GNT9Q6UX72 402 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SYVN1Q86TM6 617 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SLC30A8Q8IWU4 369 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PNPLA1Q8N8W4 532 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 CHST4Q8NCG5 386 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TTYH1Q9H313 450 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PDLIM7Q9NR12 457 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 B3GALT2O43825 422 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 RB1P06400 928 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ELK4P28324 431 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 VIPR1P32241 457 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PGDP52209 483 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SCAPQ12770 1279 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TSTQ16762 297 aaKnown RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PJA1Q8NG27 643 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 FBXO27Q8NI29 283 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 KBTBD7Q8WVZ9 684 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 CMTM7Q96FZ5 175 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 MCCC1Q96RQ3 725 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 IL12RB2Q99665 862 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 IL36AQ9UHA7 158 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 A0A075B6Q4 140 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SNNO75324 88 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PABPC4LP0CB38 370 aaKnown RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 CHRM1P11229 460 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF30P17039 623 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 MOGQ16653 247 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF404Q494X3 552 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 CYBRD1Q53TN4 286 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TTLQ8NG68 377 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ZFAND2BQ8WV99 257 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PEX13Q92968 403 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 PMEPA1Q969W9 287 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 C1QTNF1Q9BXJ1 281 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 DNAJC15Q9Y5T4 150 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 IGKV6D-21A0A0A0MT36 114 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 AHCYP23526 432 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ETV4P43268 484 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 RAB8AP61006 207 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 TXNL4AP83876 142 aaKnown RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 FBXO43Q4G163 708 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 LRRTM4Q86VH4 590 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 EFHD2Q96C19 240 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 ALPK1Q96QP1 1244 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 SLC45A1Q9Y2W3 748 aa13.6□□□□□ -0.23
CPSF1-212ENST00000616140 RBM7Q9Y580 266 aaKnown RBP13.6□□□□□ -0.23
CPSF1-212ENST00000616140 INPPL1O15357 1258 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 T-ENOLP0DO92 83 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 HSD17B2P37059 387 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 OR1E2P47887 323 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 LY6G5CQ5SRR4 150 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 OR52B6Q8NGF0 335 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ISOC1Q96CN7 298 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RAB11FIP5Q9BXF6 653 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 TM9SF3Q9HD45 589 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 SRRDQ9UH36 339 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 CDH7Q9ULB5 785 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 COCHO43405 550 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms