RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SYPP08247 313 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 HSD3B1P14060 373 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 HSD3B2P26439 372 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 RPL38P63173 70 aaKnown RBP29.36■■■□□ 2.29
CTCF-203ENST00000566078 ZC3H14Q6PJT7 736 aaKnown RBP29.36■■■□□ 2.29
CTCF-203ENST00000566078 OR2I1PQ8NGU4 316 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 COL25A1Q9BXS0 654 aaPredicted RBP29.36■■■□□ 2.29
CTCF-203ENST00000566078 PITHD1Q9GZP4 211 aaPredicted RBP29.36■■■□□ 2.29
CTCF-203ENST00000566078 GMEB2Q9UKD1 530 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 SLC12A4Q9UP95 1085 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 RNF215Q9Y6U7 377 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 CAPN7Q9Y6W3 813 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 RHPN2P1A8MT19 583 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 CAPN14A8MX76 684 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 NRP2O60462 931 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 HRH2P25021 359 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 PHEXP78562 749 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 SQLEQ14534 574 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 ARMC6Q6NXE6 501 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 SPESP1Q6UW49 350 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP29.35■■■□□ 2.29
CTCF-203ENST00000566078 NT5DC2Q9H857 520 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 DMRT3Q9NQL9 472 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 TSC22D4Q9Y3Q8 395 aa29.35■■■□□ 2.29
CTCF-203ENST00000566078 ALPPL2P10696 532 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 PRPH2P23942 346 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 GRK3P35626 688 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 RPS13P62277 151 aaKnown RBP29.34■■■□□ 2.29
CTCF-203ENST00000566078 SLC5A12Q1EHB4 618 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 PLD3Q8IV08 490 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 DUSP23Q9BVJ7 150 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 C1orf109Q9NX04 203 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 SNX7Q9UNH6 387 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 PCDHGA5Q9Y5G8 931 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 HAT1O14929 419 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 SEC22BO75396 215 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 AMD1P17707 334 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 GRIA3P42263 894 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 STX1BP61266 288 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 KLF10Q13118 480 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 ZNF425Q6IV72 752 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 ZCCHC8Q6NZY4 707 aaKnown RBP29.34■■■□□ 2.29
CTCF-203ENST00000566078 KLHL35Q6PF15 583 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 ZFAND4Q86XD8 727 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 ANKRD53Q8N9V6 530 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 CMTM7Q96FZ5 175 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 GTPBP2Q9BX10 602 aaKnown RBP29.34■■■□□ 2.29
CTCF-203ENST00000566078 RHBGQ9H310 441 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 ARL8BQ9NVJ2 186 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 LRIT1Q9P2V4 623 aa29.34■■■□□ 2.29
CTCF-203ENST00000566078 POLR3HQ9Y535 204 aaPredicted RBP29.34■■■□□ 2.29
CTCF-203ENST00000566078 FRYLO94915 3013 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 TRBC2A0A5B9 178 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 FOXE1O00358 373 aaPredicted RBP29.33■■■□□ 2.29
CTCF-203ENST00000566078 OR1F1O43749 312 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 PROS1P07225 676 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 PIK3CBP42338 1070 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 CAPZBP47756 277 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 ATP4BP51164 291 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 DIO3P55073 304 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 PPP1CAP62136 330 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 EMX2Q04743 252 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 KRT72Q14CN4 511 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 SPRED3Q2MJR0 410 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 RFTN2Q52LD8 501 aaPredicted RBP29.33■■■□□ 2.29
CTCF-203ENST00000566078 VN1R5Q7Z5H4 357 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 YTHDF3Q7Z739 585 aaKnown RBP29.33■■■□□ 2.29
CTCF-203ENST00000566078 AIG1Q9NVV5 245 aa29.33■■■□□ 2.29
CTCF-203ENST00000566078 MYO15AQ9UKN7 3530 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 ANKDD1BA6NHY2 528 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 SH3BGRLO75368 114 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 CBX6O95503 412 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 ETHE1O95571 254 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 IDO1P14902 403 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 MAGP20916 626 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 PPM1FP49593 454 aaPredicted RBP29.32■■■□□ 2.28
CTCF-203ENST00000566078 CYP4F2P78329 520 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 MAD2L1Q13257 205 aaPredicted RBP29.32■■■□□ 2.28
CTCF-203ENST00000566078 GSTA3Q16772 222 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 SMU1Q2TAY7 513 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 ZNF438Q7Z4V0 828 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 PAQR7Q86WK9 346 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 OR4C6Q8NH72 309 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 MRGBPQ9NV56 204 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 VPS29Q9UBQ0 182 aa29.32■■■□□ 2.28
CTCF-203ENST00000566078 A0A0J9YY10 115 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 NPIPB8E9PQR5 432 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 TRIM38O00635 465 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 SLC22A2O15244 555 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 ZW10O43264 779 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 NUDT21O43809 227 aaKnown RBP29.31■■■□□ 2.28
CTCF-203ENST00000566078 FKBP9O95302 570 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 MYF5P13349 255 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 PIK3R1P27986 724 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 SERPINB1P30740 379 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 EPHA4P54764 986 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 BNIP1Q12981 228 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 APIPQ96GX9 242 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 EVA1BQ9NVM1 165 aa29.31■■■□□ 2.28
CTCF-203ENST00000566078 NOP53Q9NZM5 478 aaKnown RBP29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms