RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TIE1P35590 1138 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 MNX1P50219 401 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GAD2Q05329 585 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF616Q08AN1 781 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GAS6Q14393 721 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF783Q6ZMS7 281 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ADGRD2Q7Z7M1 963 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C14orf80Q86SX3 495 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 MAP4K3Q8IVH8 894 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RNF148Q8N7C7 305 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TC2NQ8N9U0 490 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 OR6Q1Q8NGQ2 317 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 OR6K2Q8NGY2 324 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 DCAF4Q8WV16 495 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SLC5A11Q8WWX8 675 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZIM3Q96PE6 472 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF442Q9H7R0 627 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHB16Q9NRJ7 776 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 AGPAT3Q9NRZ7 376 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM184CQ9NVA4 438 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C19orf25Q9UFG5 118 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SH2B3Q9UQQ2 575 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TMX2Q9Y320 296 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PI4KAP42356 2102 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 MYO7AQ13402 2215 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 FTCDNL1E5RQL4 147 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 LAMTOR5O43504 91 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CSDE1O75534 798 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 LGI1O95970 557 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TIMP2P16035 220 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GSTM3P21266 225 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 IL32P24001 234 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF84P51523 738 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CACNG7P62955 275 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 NADK2Q4G0N4 442 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 NHSL2Q5HYW2 709 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PLET1Q6UQ28 207 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RAD54LQ92698 747 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ATOH1Q92858 354 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 REEP6Q96HR9 211 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C7orf26Q96N11 449 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM209Q96SK2 561 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 VRK1Q99986 396 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 IFT27Q9BW83 186 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PTGES2Q9H7Z7 377 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM165Q9HC07 324 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 DDX43Q9NXZ2 648 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TNFRSF10DQ9UBN6 386 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TUBE1Q9UJT0 475 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CFAP43Q8NDM7 1665 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 hCG_1809904A0A1W2PP81 198 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PPE2 198 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 IQCF5A8MTL0 148 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 KCNK1O00180 336 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TXNL1O43396 289 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 B3GALT2O43825 422 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CIDEAO60543 219 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C1RP00736 705 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GSTP1P09211 210 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 FAM86B2P0C5J1 330 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 MAOAP21397 527 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PTGER4P35408 488 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CRKLP46109 303 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RAP1GAPP47736 663 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CDK5R2Q13319 367 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 LRRC32Q14392 662 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZFP69Q49AA0 526 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 EGFL6Q8IUX8 553 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RAVER1Q8IY67 606 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 TBC1D21Q8IYX1 336 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ADGRF3Q8IZF5 1079 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C8orf59Q8N0T1 100 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ACTL9Q8TC94 416 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C16orf78Q8WTQ4 265 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 IP6K1Q92551 441 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 HLA-CQ95604 372 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 FKBP10Q96AY3 582 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 INTS12Q96CB8 462 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 KIRREL1Q96J84 757 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C1orf50Q9BV19 199 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SP140LQ9H930 580 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SALL4Q9UJQ4 1053 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 AUP1Q9Y679 476 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SSH2Q76I76 1423 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1B0GVT2 93 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RAD51CO43502 376 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 KIAA0513O60268 411 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CHRM5P08912 532 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ETS1P14921 441 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF182P17025 639 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GSTT1P30711 240 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RPL3P39023 403 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 AGFG1P52594 562 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 VITQ6UXI7 678 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 IL34Q6ZMJ4 242 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ASB18Q6ZVZ8 466 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GTF2H5Q6ZYL4 71 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF546Q86UE3 836 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SH3RF3Q8TEJ3 882 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SGTBQ96EQ0 304 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms