RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RIPOR1Q6ZS17 1223 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 NEK10Q6ZWH5 1172 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 FBXO15Q8NCQ5 510 aaPredicted RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 OR1N1Q8NGS0 311 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 BRIX1Q8TDN6 353 aaKnown RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 MAIP1Q8WWC4 291 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 HAS2Q92819 552 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 PKP4Q99569 1192 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 MKKSQ9NPJ1 570 aaPredicted RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 OLAHQ9NV23 265 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 RIC8BQ9NVN3 520 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 INTS10Q9NVR2 710 aaKnown RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 UTP6Q9NYH9 597 aaKnown RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 TAC3Q9UHF0 121 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 VPS9D1Q9Y2B5 631 aa10.79□□□□□ -0.68
VPS28-214ENST00000531032 MRPS2Q9Y399 296 aaKnown RBP10.79□□□□□ -0.68
VPS28-214ENST00000531032 ABCA12Q86UK0 2595 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.78□□□□□ -0.68
VPS28-214ENST00000531032 LOC102723996A0A087X1L8 192 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TRAV17A0A0B4J275 112 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 DYTNA2CJ06 578 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 ENO4A6NNW6 628 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 ZNF839A8K0R7 811 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 E5RI56 91 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 E7ENX8 843 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TXNDC9O14530 226 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 FFAR3O14843 346 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 GPR42O15529 346 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 FOXS1O43638 330 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 AVILO75366 819 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 BMP10O95393 424 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 SLC16A8O95907 504 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 PAMP19021 973 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 CXCR2P25025 360 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TNFSF10P50591 281 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TDGF1P3P51864 188 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TAP2Q03519 686 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 ZRSR2Q15696 482 aaKnown RBP10.78□□□□□ -0.68
VPS28-214ENST00000531032 KCTD19Q17RG1 926 aaPredicted RBP10.78□□□□□ -0.68
VPS28-214ENST00000531032 C1QL3Q5VWW1 255 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 NEPROQ6NW34 567 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 ZNF662Q6ZS27 426 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 LRRC8AQ8IWT6 810 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 REXO1L1PQ8IX06 675 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 SLC34A3Q8N130 599 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 TRIM58Q8NG06 486 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 GIMAP7Q8NHV1 300 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 ZNF480Q8WV37 535 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 RERGQ96A58 199 aaPredicted RBP10.78□□□□□ -0.68
VPS28-214ENST00000531032 MMABQ96EY8 250 aaPredicted RBP10.78□□□□□ -0.68
VPS28-214ENST00000531032 TAAR6Q96RI8 345 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 SLC30A3Q99726 388 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 DRC3Q9H069 523 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 HOMER3Q9NSC5 361 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 PTGFRNQ9P2B2 879 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 KLHL42Q9P2K6 505 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 MED16Q9Y2X0 877 aa10.78□□□□□ -0.68
VPS28-214ENST00000531032 A0A0A6YYC8 382 aaPredicted RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 A0A1B0GUH1 482 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 FAM237BA0A1B0GVD1 139 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 I3L1I5 382 aaPredicted RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 HAT1O14929 419 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 P2RX6O15547 441 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ZG16O60844 167 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 JRKO75564 520 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 HEXBP07686 556 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ANXA5P08758 320 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 EFNA3P52797 238 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ABATP80404 500 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 SARNPP82979 210 aaKnown RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 EEF1A2Q05639 463 aaKnown RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 TSTA3Q13630 321 aaPredicted RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 FAM53BQ14153 422 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 PCOLCEQ15113 449 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 TTLL9Q3SXZ7 439 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ZNF470Q6ECI4 717 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 TMEM205Q6UW68 189 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 CAND1Q86VP6 1230 aaKnown RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 ZC3H7AQ8IWR0 971 aaKnown RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 LRRC56Q8IYG6 542 aaPredicted RBP10.77□□□□□ -0.69
VPS28-214ENST00000531032 SIRT6Q8N6T7 355 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 PRELID2Q8N945 189 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 PPFIBP2Q8ND30 876 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ASB11Q8WXH4 323 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 NR4A3Q92570 626 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 KCNJ9Q92806 393 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 YIPF2Q9BWQ6 316 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 RNF32Q9H0A6 362 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ZNF700Q9H0M5 742 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 PLA2G3Q9NZ20 509 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 PCYOX1Q9UHG3 505 aa10.77□□□□□ -0.69
VPS28-214ENST00000531032 ZCWPW2A0A1B0GU75 182 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 GFYI3L273 518 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 SMAPO00193 183 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 CEP104O60308 925 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 CELA2AP08217 269 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 CYC1P08574 325 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 MPC1LP0DKB6 136 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 MLNP12872 115 aa10.76□□□□□ -0.69
VPS28-214ENST00000531032 ENO3P13929 434 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms