RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC19A2O60779 497 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ITGAMP11215 1152 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ERGP11308 486 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ESRRAP11474 423 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 EZRP15311 586 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 MST1P26927 711 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 RPA3P35244 121 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF33BQ06732 778 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 FAM53BQ14153 422 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 PCOLCEQ15113 449 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 NDUFA9Q16795 377 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ANKRD20A4Q4UJ75 823 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 PCID2Q5JVF3 399 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 FAAH2Q6GMR7 532 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 TXLNBQ8N3L3 684 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 AMER3Q8N944 861 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 OR9A1PQ8NGU1 263 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 MAGED4Q96JG8 741 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 C19orf25Q9UFG5 118 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 MKL2Q9ULH7 1088 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 RUVBL1Q9Y265 456 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 ITPR3Q14573 2671 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 MATN4O95460 622 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 F10P00742 488 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 IFNB1P01574 187 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 C8orf89P0DMQ9 161 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 CAPN3P20807 821 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 CCSMST1Q4G0I0 132 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 KRTCAP3Q53RY4 240 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF766Q5HY98 468 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 RNF187Q5TA31 235 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 MRNIPQ6NTE8 343 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 SDCCAG8Q86SQ7 713 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 LDB1Q86U70 411 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 PAQR7Q86WK9 346 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 THAP3Q8WTV1 239 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 IMMP1LQ96LU5 166 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF354BQ96LW1 612 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 EBNA1BP2Q99848 306 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 ACAT2Q9BWD1 397 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 TRIM8Q9BZR9 551 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 TRIM5Q9C035 493 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 LACRTQ9GZZ8 138 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 GPAMQ9HCL2 828 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 RAB6BQ9NRW1 208 aa14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 MARCH4Q9P2E8 410 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 STOX2Q9P2F5 926 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-201ENST00000301897 GTF3C1Q12789 2109 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 TTI1O43156 1089 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 NRP2O60462 931 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 CATP04040 527 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 APRTP07741 180 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 SNRPB2P08579 225 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 GRIA1P42261 906 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 AVPR1BP47901 424 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 EIF3BP55884 814 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 ABATP80404 500 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 PRDX1Q06830 199 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 GBX1Q14549 363 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 OASLQ15646 514 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 PLAG1Q6DJT9 500 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 LRRC8BQ6P9F7 803 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 NEK10Q6ZWH5 1172 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 ZC3H7AQ8IWR0 971 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 CCDC89Q8N998 374 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 OR2A5Q96R48 311 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 TCF12Q99081 682 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 IL22Q9GZX6 179 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 CHRAC1Q9NRG0 131 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 PAK5Q9P286 719 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 SH3BGRL2Q9UJC5 107 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF148Q9UQR1 794 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 RUVBL2Q9Y230 463 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 REXO2Q9Y3B8 237 aaKnown RBP14□□□□□ -0.17
CCDC88B-201ENST00000301897 NF1P21359 2839 aa14□□□□□ -0.17
CCDC88B-201ENST00000301897 SOWAHDA6NJG2 315 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 MYO1CO00159 1063 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 CDK2AP1O14519 115 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 LIASO43766 372 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 CLDN14O95500 239 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ESR1P03372 595 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 CELA2AP08217 269 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ADARP55265 1226 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 FASTKQ14296 549 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 HKDC1Q2TB90 917 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ICE2Q659A1 982 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF425Q6IV72 752 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 C4orf22Q6V702 233 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 Q6ZPB1 254 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 CPEB2Q7Z5Q1 589 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 KIAA1328Q86T90 577 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 EID3Q8N140 333 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ARHGEF39Q8N4T4 335 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 OTUD6BQ8N6M0 293 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 HORMAD2Q8N7B1 307 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 MCOLN3Q8TDD5 553 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ATG4AQ8WYN0 398 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 MTFMTQ96DP5 389 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 EIF2B3Q9NR50 452 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 TREX1Q9NSU2 369 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms